PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G1859
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 194aa    MW: 21649.5 Da    PI: 6.7906
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G1859genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.18.3e-5648141194
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                  vreqdr+lPian+srimk++lP+n+ki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yre +
  Gh_A10G1859  48 VREQDRYLPIANISRIMKRALPTNGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKIYLARYREGD 141
                  69*****************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-5344142IPR009072Histone-fold
SuperFamilySSF471135.74E-3951143IPR009072Histone-fold
PfamPF008085.7E-2854118IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.2E-2182100No hitNo description
PROSITE patternPS00685085101IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.2E-21101119No hitNo description
PRINTSPR006154.2E-21120138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDTNMFHFHF PSDLRSFKDM ADGMARGPTS PAGGSHESGE QCSSHSTVRE QDRYLPIANI  60
SRIMKRALPT NGKIAKDAKE TVQECVSEFI SFITSEASDK CQKEKRKTIN GDDLLWAMAT  120
LGFEDYIEPL KIYLARYREG DAKGSIRGEV PLKRDAVRVL AVPNPQFPIE GSLNYINSQA  180
QGHHMIVPSM QGNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4747139193NF-YB
4awl_B1e-4747139294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4747139294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B1e-4748139192Transcription factor HapC (Eurofung)
4g92_B1e-4748139192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.40470.0boll| ovule| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO783370720.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456047.11e-141PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
SwissprotQ8VYK43e-68NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0D2UXJ91e-142A0A0D2UXJ9_GOSRA; Uncharacterized protein
STRINGGorai.011G241600.11e-140(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.77e-71nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]