PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G1944

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 478aa MW: 53782.5 Da PI: 4.8353

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G1944	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66.9	5.7e-21	11	133	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 p+GfrF Pt ee++++yL++ ++g++++ v+ke+diy + ePw++ ++++e + +k kk +++r +r++ +g W ++ ++ s + Gh_A10G1944 11 PVGFRFLPTKEEILCDYLQPFIKGDPIPS-GVMKELDIYGAnrEPWNIF-D--QDSEESlWVITKLMKK--SKSRIERTAGDGCWLQQYIKEVKNSDG 102 89************************9.99**9765595.2..3333331444444443..578********998866555669 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ge++g k +++ +++++k ++ +W+mhe++l Gh_A10G1944 103 GEVIGYDKYFTYSRKKSQK-SNGQWIMHEFSL 133 999*****9766666.89******98 PP
2	NAM	35.3	3.5e-11	247	343	28	128
NAM 28 leleevikevdiykv..ePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 ++ v+ke+diy + ePw++ ++++ e + +k +k ++++r +r++ +g W ++ ++ s +ge++g k + + +++++k ++ +W+ Gh_A10G1944 247 IPS-GVMKELDIYGAnrEPWNIF---DQDSAESlWVITKLKK--KSKSRIERTAGDGCWLQQYIKEVKNSDGGEVIGYDKYFKYSRKKNQK-SNGQWI 337 555.6899999765595...2333344134444433..3578********998866555669999*****9766666.89 PP NAM 123 mheyrl 128 mhe++l Gh_A10G1944 338 MHEFSL 343 **98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-23	3	152	IPR003441	NAC domain
PROSITE profile	PS51005	25.862	10	152	IPR003441	NAC domain
Pfam	PF02365	3.3E-13	11	133	IPR003441	NAC domain
PROSITE profile	PS51005	13.727	207	362	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-12	242	362	IPR003441	NAC domain
Pfam	PF02365	2.8E-5	263	343	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MSTVRPQLEI PVGFRFLPTK EEILCDYLQP FIKGDPIPSG VMKELDIYGA NREPWNIFDQ 60 DSEESLWVIT KLMKKSKSRI ERTAGDGCWL QQYIKEVKNS DGGEVIGYDK YFTYSRKKSQ 120 KSNGQWIMHE FSLKDQEALG LSDFVICEIK NKDAAVVSPV YEECEGEINK NKKRKLMEAP 180 STSTNDFAFL PVGNQAFDSM APELGGFSPS PPFTACLNQQ PNPWTSAGVG GNLGVPDYNS 240 HHLGDPIPSG VMKELDIYGA NREPWNIFDQ DSAESLWVIT KLKKKSKSRI ERTAGDGCWL 300 QQYIKEVKNS DGGEVIGYDK YFKYSRKKNQ KSNGQWIMHE FSLKDQEALG LSDFVICEIK 360 NKDAAVVSPD YEECEGEINK NKKRKLMEVP STSTNDFAFV PMGNQAFEYM APEAGGLSPL 420 PPFNACLNQQ PNPWTSAGVG GNLGVPYYNS HHLEEAREDV NANLYLTLQE LDNFLNSD

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MSTVRPQLEI PVGFRFLPTK EEILCDYLQP FIKGDPIPSG VMKELDIYGA NREPWNIFDQ  60
DSEESLWVIT KLMKKSKSRI ERTAGDGCWL QQYIKEVKNS DGGEVIGYDK YFTYSRKKSQ  120
KSNGQWIMHE FSLKDQEALG LSDFVICEIK NKDAAVVSPV YEECEGEINK NKKRKLMEAP  180
STSTNDFAFL PVGNQAFDSM APELGGFSPS PPFTACLNQQ PNPWTSAGVG GNLGVPDYNS  240
HHLGDPIPSG VMKELDIYGA NREPWNIFDQ DSAESLWVIT KLKKKSKSRI ERTAGDGCWL  300
QQYIKEVKNS DGGEVIGYDK YFKYSRKKNQ KSNGQWIMHE FSLKDQEALG LSDFVICEIK  360
NKDAAVVSPD YEECEGEINK NKKRKLMEVP STSTNDFAFV PMGNQAFEYM APEAGGLSPL  420
PPFNACLNQQ PNPWTSAGVG GNLGVPYYNS HHLEEAREDV NANLYLTLQE LDNFLNSD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX596395	1e-46	JX596395.1 Gossypium hirsutum clone NBRI_GE32970 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016676568.1	1e-179	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	A0A2P5W3C4	0.0	A0A2P5W3C4_GOSBA; Uncharacterized protein
STRING	Gorai.011G257000.1	1e-157	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16345	3	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-15	NAC domain containing protein 83