PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G2021
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 366aa    MW: 42065.4 Da    PI: 6.1912
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G2021genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.94.5e-45171461127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                  lp+G+rF+Ptd+el+++yL++k +g +l+  + i+ev+ y+++P++L +     + ++ ekewy+F++r++ky++g+r+ r++ +gyWkatg dk+vl
  Gh_A10G2021  17 LPAGYRFKPTDQELMDYYLRRKFSGLPLPP-NKIREVNFYSHDPETLTAmnnkvSSNEVEKEWYYFTPRERKYTNGSRPARKAGDGYWKATGVDKQVL 113
                  799************************999.77**************84355433333566************************************* PP

          NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                    +g+++g kktLvf++g+ pkg+kt+W+mhey 
  Gh_A10G2021 114 L-NGKKIGSKKTLVFHEGKPPKGSKTNWIMHEYV 146
                  *.999****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-5116173IPR003441NAC domain
PROSITE profilePS5100550.13217174IPR003441NAC domain
PfamPF023651.9E-2318146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLKRLKEEDD EEYFRMLPAG YRFKPTDQEL MDYYLRRKFS GLPLPPNKIR EVNFYSHDPE  60
TLTAMNNKVS SNEVEKEWYY FTPRERKYTN GSRPARKAGD GYWKATGVDK QVLLNGKKIG  120
SKKTLVFHEG KPPKGSKTNW IMHEYVSSHA PVRVRHGKED MKLDNWVLCK LYQNSREAKQ  180
KHRTTQEGNG LECQEKVEAD IAAIVPNKMA AAVSESINMV ASPAYHQYEQ LDVESFNMNF  240
EQDTNRIPEQ GYPMPLFGEN SNYYIFDNNS TLGGGFQQQV PNFGDFVTNA AAAAPVTSMF  300
PLGNQFQSMA NAGFNLPPLP LQFRPQWLEL RPPLQQFSGV NPDFDFSVDE YLLDYEFGMP  360
PPPEFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-471718020174NAC domain-containing protein 19
3swm_B6e-471718020174NAC domain-containing protein 19
3swm_C6e-471718020174NAC domain-containing protein 19
3swm_D6e-471718020174NAC domain-containing protein 19
3swp_A6e-471718020174NAC domain-containing protein 19
3swp_B6e-471718020174NAC domain-containing protein 19
3swp_C6e-471718020174NAC domain-containing protein 19
3swp_D6e-471718020174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147510.0JX614751.1 Gossypium hirsutum clone NBRI_GE58375 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5YTG30.0A0A2P5YTG3_GOSBA; Uncharacterized protein
STRINGGorai.011G269400.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3576222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.19e-49NAC domain containing protein 32