PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G2115
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 158aa    MW: 18137.7 Da    PI: 7.9238
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G2115genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-155101196
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f kvlt+ d  k  rl +p++ ++++   +g+  +sk   ++de+g +W +++ y +++g+    vl++GW++Fv  +g+ +gD ++++ d + e+++
  Gh_A10G2115   5 FSKVLTNTDIQK--RLAVPNNSLKHFeleNGN--CSKSFEVKDENGFTWPFRC-YVRNDGAykkPVLSSGWRQFVLNKGVHQGDLITLYKDVEAEASY 97 
                  678887766665..59*******777864444..9999***************.54444443559***********************9554455556 PP

                  EEEE CS
           B3  93 vvkv 96 
                  ++ v
  Gh_A10G2115  98 KIEV 101
                  6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.0953105IPR003340B3 DNA binding domain
SuperFamilySSF1019365.23E-15491IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-15492IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-194101No hitNo description
PfamPF023621.4E-125101IPR003340B3 DNA binding domain
SMARTSM010191.2E-65105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MKILFSKVLT NTDIQKRLAV PNNSLKHFEL ENGNCSKSFE VKDENGFTWP FRCYVRNDGA  60
YKKPVLSSGW RQFVLNKGVH QGDLITLYKD VEAEASYKIE VQRKIKLLGK ECWYNLEPDQ  120
PTGATAQDKR KILLFGKECG YFLEPEQPTD ATGEVIQD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.56260.0boll| ovule| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617728.11e-115PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A2P5YSS01e-114A0A2P5YSS0_GOSBA; Uncharacterized protein
STRINGGorai.011G111100.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16950410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-10B3 family protein