PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A10G2134
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 666aa    MW: 72186.8 Da    PI: 6.7613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A10G2134genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.7e-08261281526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd C +aHg
  Gh_A10G2134 261 PCPEFRK-GACPKGDACEYAHG 281
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.6E-1473180IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-1374154IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02276106IPR002110Ankyrin repeat
PROSITE profilePS5029714.92876156IPR020683Ankyrin repeat-containing domain
PfamPF136373.9E-877135No hitNo description
CDDcd002044.32E-1378180No hitNo description
SMARTSM002480.031111143IPR002110Ankyrin repeat
PROSITE profilePS5008810.82111146IPR002110Ankyrin repeat
PROSITE profilePS5010313.638256283IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-6256282IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5261281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5261282IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.019291315IPR000571Zinc finger, CCCH-type
SMARTSM0035630291314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MCSGSKSELV PSNFTMEGEL QGCKPDALSK CSVLLELAAT DDLVAFKTEV EEKGLDLGEA  60
SYWYGRRIGS KKMGFEERTP LMIAAMFGSI DVLNYIVGTR KIDVNRACGA DGVTAVHCAV  120
AGGASSSVQV IKLLLDASAD ANCVDANGNK PIDLIVPGLK SLSNSKKKVI ELLLKGDDVD  180
GGLSLEEESE KTVLKKEYPV DISLPDINNG IYGTDDFRMY TFKVKPCSRA YSHDWTECPF  240
VHPGENARRR DLRKYPYSCV PCPEFRKGAC PKGDACEYAH GVFESWLHPA QYRTRLCKDE  300
TGCTRKVCFF AHKPDELRPV YASTGSAMPS PRSSAVNAVD MSTLSPLAVG SPSLPLPTAS  360
TPPMSPLTAA SSPKSGGLWQ NKVNLTPPAL QLPGSRLKTA FNARDLDLEM ELLGLENQLQ  420
QQKLMDEISS LSSPSCWSKE YSRLGDMQPT NLADAFGSLD PSLLSPLHGL SVKSATPTQM  480
QSPTALQIRQ NQLRATYPPN HSSSLVRNPS AYGFDSSAAV AAALMNSRSS AFAKRSQSFI  540
DRGAVTSRAG LTAPANSATM MSSNISDWSS PDGKLDWGIQ GDELNKLRKS ASFGFRNTPT  600
PTPTPTPSNI NEPDVSWVHS LVKDVTPASS GSMQQQQQQY NIGKGVRERL PPWVEQMYIE  660
QEQMVA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9637843e-94JX963784.1 Gossypium hirsutum clone NBRI_TRANS-1012 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619997.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2P5XG540.0A0A2P5XG54_GOSBA; Uncharacterized protein
STRINGGorai.011G289400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein