PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G2150

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 319aa MW: 35970.1 Da PI: 8.008

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G2150	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.7e-32	74	127	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Gh_A10G2150 74 PRLRWTPDLHLRFVHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 127 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.198	70	130	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-30	70	128	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-15	71	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-23	74	129	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	75	126	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MASVDTFEKN SNNNRDLADE EEEEEEEEEA EEDRNKINYK TGNEGESSSN SSVEETGKKS 60 TTGSVRPYNR SKTPRLRWTP DLHLRFVHAV ERLGGQDRAT PKLVLQLMNI KGLSIAHVKS 120 HLQMYRSKKI DDPNQVIQKK EIVFQNGDHH HHIHKLSQLP MRQSFNNQSP SSTFRYGDVI 180 SWRGNNNKNV LDMTSKGLYC SVAKRLFSSC NNYNSLSFSS QRPTMGTNCT PLKRKMISSV 240 VSNIEDRLDL DLSLKVTTVA GEFDEKGSLD LDDSGGLSLS LASSSSFSKL CRLNKEVKYG 300 DGNRKQEVRT MASTLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	75	129	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	75	129	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	75	129	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	75	129	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	75	129	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	75	129	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	75	129	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	75	129	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	75	129	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	75	129	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	75	129	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	75	129	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622108.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A2P5XPN5	0.0	A0A2P5XPN5_GOSBA; Uncharacterized protein
STRING	Gorai.011G291200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	5e-49	G2-like family protein