PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A10G2215

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 255aa MW: 28312.5 Da PI: 10.0677

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A10G2215	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.3e-38	32	89	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ +kcprC+s ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+ Gh_A10G2215 32 HTPQKCPRCESLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKR 89 56789**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.2E-33	34	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-25	34	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MKQNQQQGRR LKPLMAAEHH HHRHQQQQQQ QHTPQKCPRC ESLNTKFCYY NNYSLSQPRY 60 FCKACRRYWT QGGTLRNVPV GGGCRKGKRP KLSSSGDDDN PTRQSTQRNL ISPPVQLQAK 120 ESDSLVSSSA AMGSYYPASG FLSSLAAIQP MNQPQCLKQP LNQALRIGGG DLGSSTSNLG 180 LLQGYGVPFL GSQNHQQTQF QWPAAGNSYY QQNWHQNFIN EAVTSTAKVT NTSNSKTASS 240 LSPNQWPDLP AYGAP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964335	6e-87	JX964335.1 Gossypium hirsutum clone NBRI_TRANS-604 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016710999.1	0.0	PREDICTED: dof zinc finger protein DOF4.4-like
TrEMBL	A0A1U8LCV2	0.0	A0A1U8LCV2_GOSHI; dof zinc finger protein DOF4.4-like
STRING	Gorai.011G029200.1	1e-159	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15986	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-32	Dof family protein