PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0057
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 386aa    MW: 44544.9 Da    PI: 9.7785
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0057genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1289.4e-401663071131
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg.. 88 
                  aa k+drhski T+ g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qakp+i +l+++        + s++  +++e++++s+  + ++  
  Gh_A11G0057 166 AASKTDRHSKINTANGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLIQAKPEINKLMNNnnnsfgfaK-SPS--STSETEVVSGIDKAAAid 260
                  5889*************************************************************666665431.222..122233333332222255 PP

          TCP  89 ....kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                      k  +s++++k+++++++s++ la++ r kar+ra+ rt+ek++
  Gh_A11G0057 261 gnipKGTPSKKEKKERRQRKTSFRPLARDMRVKARERAKARTKEKNM 307
                  66667777777777777777789********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-40168307IPR005333Transcription factor, TCP
PROSITE profilePS5136931.701169227IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.009288305IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MKKGQNFKVY ANEIVALAIK LKHLEISSIS LYENYDFVHR DSPHRHREYM HIISFAVLVF  60
PKGNGNNNDP ITYFDNSILP LSFFHFPSSP YYNQCELLQL VDDYDVLWNQ QQQQRFDDDD  120
DDQFLHQTTL LTDNSVSETI VNLPDCRHNN TTTDIHQQPM PRKRPAASKT DRHSKINTAN  180
GPRDRRMRLS LDVAREFFGL QDMLGYDKAS RTVEWLLIQA KPEINKLMNN NNNSFGFAKS  240
PSSTSETEVV SGIDKAAAID GNIPKGTPSK KEKKERRQRK TSFRPLARDM RVKARERAKA  300
RTKEKNMSLR LNNETRDNDP NRFGSSWSST WTKQPGIQHH HNNNNTVLQA NNININGDRM  360
IWSLNCLQNT GLINQEAQSF GKPREA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6229380.0JX622938.1 Gossypium hirsutum clone NBRI_GE69896 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709019.10.0PREDICTED: transcription factor TCP18-like
TrEMBLA0A1U8L7910.0A0A1U8L791_GOSHI; transcription factor TCP18-like
STRINGGorai.007G007500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-29TCP family protein