PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0082
Common NameDBP3a
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 24121.8 Da    PI: 4.4054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0082genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-1660108255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+++l+g
  Gh_A11G0082  60 VYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAALALKG 108
                  59***6..668*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.1E-2860117IPR001471AP2/ERF domain
SMARTSM003809.3E-2960124IPR001471AP2/ERF domain
PfamPF008472.8E-1060108IPR001471AP2/ERF domain
PROSITE profilePS5103220.5660116IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1860117IPR016177DNA-binding domain
CDDcd000181.18E-2861117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSESDPSSTN VPPKDQPPPP TVPIPDAPPQ EQSPKPSSTP LVSSKEGVSG NPTSRKLSAV  60
YRGVRSRSGK WVSEIREPRK TTRIWLGTYP TPEMAATAYD VAALALKGPD AELNFPDMVH  120
SYPKVGSTSA TDIRAAAASA AASRLLPKSV TNTGSLSKNE DTTSTTAMEI TCSGQEFIDE  180
EELLNFPNLM VDMAGGMLVS PPNWINSPPS DDSPDNSDVD TLWTYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-13611221575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.14310.0boll| leaf| ovule| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801890.0KP780189.1 Gossypium hirsutum C-repeat binding factor 6 (CBF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314143.11e-161ethylene-responsive transcription factor ERF027-like
SwissprotQ9CAN93e-48ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLQ076D81e-160Q076D8_GOSHI; DRE-binding protein 3a
STRINGGorai.007G010200.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-35ERF family protein
Publications ? help Back to Top
  1. Huang B,Liu JY
    Cloning and functional analysis of the novel gene GhDBP3 encoding a DRE-binding transcription factor from Gossypium hirsutum.
    Biochim. Biophys. Acta, 2006. 1759(6): p. 263-9
    [PMID:16935362]