PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0147
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 521aa    MW: 58224.7 Da    PI: 5.5578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0147genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.7e-5391371128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp G+rF+Ptdeel+++yL++kv+gk+ ++  vi+evd +k+ePwdLp+  +vka++ ew+fF++ d+ky++g+r nrat++gyWkatgkd++++s +
  Gh_A11G0147   9 LPIGIRFRPTDEELIDFYLRAKVNGKRKDEIGVIREVDFCKCEPWDLPHlsAVKARDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKDRKIKS-G 105
                  699************************999899***************4448888999**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  + l+g+kktLvfy+grapkg++t+Wvmheyr 
  Gh_A11G0147 106 SCLIGMKKTLVFYTGRAPKGKRTNWVMHEYRT 137
                  9*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-594160IPR003441NAC domain
PROSITE profilePS5100556.1649160IPR003441NAC domain
PfamPF023655.9E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAVISLNSLP IGIRFRPTDE ELIDFYLRAK VNGKRKDEIG VIREVDFCKC EPWDLPHLSA  60
VKARDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSCLIG MKKTLVFYTG  120
RAPKGKRTNW VMHEYRTTLD ELDGTKPGQN PFVICRLFKK QDETIEDING DDVDPGASSH  180
TEEVQSEFDG PSVEGGAGKV PDETRPVGLC NEAVAPIFDC NNDGFNACEL EETAPAQVDL  240
LGEALFQICD PMMEPLDWKL FSPLHSQIEA EGAPWMFDHV GNSFGGVKFE HGTNENDAEF  300
MNSILNNSDD YYSDDSSSRR NSVIETETPK SMAFGTNGGL YCKPDAEPAR VLPGTGTANG  360
GAFYNVLNSN GEPSNHVNTA CNVDTAPTIR IRSRAHRIQP DTENFDTQGI ASRRCKLVVH  420
SPRFEEKEHE SKPILTKGVK AMEEYISVGN DAMDEPQIFE TSKRDVLRSK SKIPVSEAVS  480
YRCLKRFSAR RQHKPFSVIM FRVVAVMLIL FVALVSTLNV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-41816314171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.100040.0boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472260.0KC847226.1 Gossypium hirsutum NAC domain protein NAC49 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710372.10.0PREDICTED: NAC domain-containing protein 91-like
TrEMBLA0A1U8L6Z10.0A0A1U8L6Z1_GOSHI; NAC domain-containing protein 91-like
STRINGGorai.007G017500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-89TCV-interacting protein