PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G0290

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 332aa MW: 37495.6 Da PI: 8.4519

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G0290	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.9	6.6e-56	13	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL kkv g +++ +i evd++k+ePwdLp k+k +ekewyfF+ r++ky+tg r+nrat+sgyWkatgkdke++ +++ Gh_A11G0290 13 LPPGFRFHPTDEELIHQYLYKKVLGISFSS-IAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRHRKYPTGLRTNRATDSGYWKATGKDKEIYM-GKS 108 79***********************999.78***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfy+grapkg kt+Wvmheyrl Gh_A11G0290 109 LVGMKKTLVFYQGRAPKGAKTNWVMHEYRL 138 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-63	10	163	IPR003441	NAC domain
PROSITE profile	PS51005	58.792	13	163	IPR003441	NAC domain
Pfam	PF02365	6.6E-29	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MANIGEEDDI MDLPPGFRFH PTDEELIHQY LYKKVLGISF SSIAIGEVDL NKSEPWDLPW 60 KAKMGEKEWY FFCVRHRKYP TGLRTNRATD SGYWKATGKD KEIYMGKSLV GMKKTLVFYQ 120 GRAPKGAKTN WVMHEYRLDG KFSIQNLPKT AKNEWVICRV FQKSSDGKKI PISSLVKASC 180 LSNELGPATG LPPLMDSSPY NGGKCEPVFA DSTYVPCFSN PIGPQANQQI TIDHNFNNRT 240 LHVSSNPCHV FPQNPFYAAD FESLGSVQEQ SMLRTLIENH GSKVQAERKI VRKPEMLSVV 300 SNRESGKKTF DDQHAPSSSS AGPVDLDCFW HY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	3	169	5	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	3	169	5	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	3	169	5	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	3	169	5	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	3	169	8	174	NAC domain-containing protein 19
3swm_B	2e-55	3	169	8	174	NAC domain-containing protein 19
3swm_C	2e-55	3	169	8	174	NAC domain-containing protein 19
3swm_D	2e-55	3	169	8	174	NAC domain-containing protein 19
3swp_A	2e-55	3	169	8	174	NAC domain-containing protein 19
3swp_B	2e-55	3	169	8	174	NAC domain-containing protein 19
3swp_C	2e-55	3	169	8	174	NAC domain-containing protein 19
3swp_D	2e-55	3	169	8	174	NAC domain-containing protein 19
4dul_A	1e-55	3	169	5	171	NAC domain-containing protein 19
4dul_B	1e-55	3	169	5	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.616	1e-152	boll

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	84168208	1e-152

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847214	0.0	KC847214.1 Gossypium hirsutum NAC domain protein NAC37 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017604999.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-131	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2P5X660	0.0	A0A2P5X660_GOSBA; Uncharacterized protein
STRING	Gorai.007G038100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25020	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-133	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]