PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0316
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 311aa    MW: 34117.4 Da    PI: 6.7704
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0316genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.34e-392989262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +++alkcprCds+ntkfCyynny+lsqPryfCk+CrryWtkGG lrnvPvGgg+rk k+s+
  Gh_A11G0316 29 HHQALKCPRCDSSNTKFCYYNNYNLSQPRYFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 89
                 57899****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-282987IPR003851Zinc finger, Dof-type
PfamPF027012.9E-333187IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4973387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQDIHLIEGG RLFNGGGDGG GGDRKLRAHH QALKCPRCDS SNTKFCYYNN YNLSQPRYFC  60
KNCRRYWTKG GVLRNVPVGG GCRKAKRSKT KPSSETTVSA TAVSALPHPE QQQQRQHQNS  120
DQRKADSHSN TESSSLNAAN CKVAVTNNNN NNSNSNNNSS SVGTTEAASA ITSRSTFYGN  180
PNNLGLEPGL LEQGSDGGIF AEIVSLTSLI TSPNNETLSF DFGTVLNRAG QWQPQQMTMS  240
MGGEEITKGL LDQTVQIEQS NLNIKLDSVF QPLDWEGNED QGLFGLPSTV DQTYWSQNQW  300
TDEDRPTLYP P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1816GGRLFNGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.162170.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3932374e-61GQ393237.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0202 SSR marker CGR5097 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732610.10.0PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBLA0A1U8N0M30.0A0A1U8N0M3_GOSHI; dof zinc finger protein DOF5.4-like
STRINGGorai.007G040400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44822656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.13e-40OBF binding protein 4