PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0318
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 513aa    MW: 56654.3 Da    PI: 9.6536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0318genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.5e-052342612455
                  HCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  24 rellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r ++P++    ++K +Ka+ L +++eYI+ Lq
  Gh_A11G0318 234 RNIIPNS----DQKRDKASFLLEVIEYIQFLQ 261
                  6788887....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-10218279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-10220281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-6223265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MHLFEFFEFV VEFRISLVIN HIKFSDPKTK GIRRRRWSSL NPGLSELKSF KCPTRSKATF  60
SRVPKSEGAV FTVAEGSSTE RNDENSNCSS YTGSGFTLWE ETAGKKGKTG KENAGETPFV  120
RDAAGTVGHW ATSSLEKGAQ SSTNNHPKSY SCLSSSQPSS KQKRQSFMEM IKSAKGSSHD  180
DDFEEDEDFV LKKESSTTTH NIGELRVKVD GKSVPDQKAN TPRSKHSATE QRRRNIIPNS  240
DQKRDKASFL LEVIEYIQFL QERVHKYEGT YQGWSHVPSK LMPWRSNQRP TENYADQSRA  300
INGVSAPSVV FPTKLNDGNI NITPTIRESA ENPIEPNKSS ATTFRAMDLT PGMMNKTMPF  360
PVSLQPNFFN TAQNTVPATQ IPPRLPSDAE NNASQPQPVL CHTGSCTANG ALPSEKLKEQ  420
ELTIEGGKIN ISSLYSQRLL NTLTQALQTS GLDLSQASIS VQIELGKQSS NRPTAPTSTL  480
KDTTVVPSTN QGKTRPRVGC GEDSDQPLKK LKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.209781e-176boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638269.10.0PREDICTED: transcription factor BIM1
RefseqXP_017638270.10.0PREDICTED: transcription factor BIM1
RefseqXP_017638271.10.0PREDICTED: transcription factor BIM1
TrEMBLA0A0B0PEH70.0A0A0B0PEH7_GOSAR; Transcription factor BIM1-like protein
STRINGGorai.007G040600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.18e-72bHLH family protein