PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0353
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 332aa    MW: 37143.8 Da    PI: 8.3915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0353genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-10168215455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Gh_A11G0353 168 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 215
                  8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.76E-11162219No hitNo description
SuperFamilySSF474591.83E-17162231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.993164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17164229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-7168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MATYSFQSHP FLLDSFFLPN TSTTKVSGFV EEGNIINPNC FPQFYQDSPV GPMLHQSNCL  60
DHSSNEPSTV TKKQSTDDGS STAVDKLESG EQVTQKKRTR NGTTSNSAQF KGAKEGKTKK  120
QKKCNDGLKN EKKGCNSKAD KKAQEKATEQ PPTGYIHVRA RRGQATDSHS LAERVRREKI  180
SERMKTLQRL VPGCDKVTGK ALMLDEIINY VQSLQNQVEF LSMKLASLSP MFYDFGVDLE  240
TLMIRPERVS STETSPLPMP CPQQCNPIQT TIAPSHNYPL LDVSTALFLQ QGLRPNLFSH  300
SQDNGSLLWD VEDQRQKIFN SSQLNDNLCS FH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.13120.0boll| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636232.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A0B0N1M10.0A0A0B0N1M1_GOSAR; Transcription factor protein
STRINGGorai.007G044400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-63bHLH family protein