PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0405
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 83aa    MW: 9358.31 Da    PI: 9.0188
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0405genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.9e-101558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   + + +a +++  +   +W+ +a+ +g g++++++k+++
      Gh_A11G0405 15 SWTPKQNKTFEKALAKYDQDtpdRWHNVAKAVG-GKSAEEVKLHY 58
                     7******************9*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.667862IPR017877Myb-like domain
SuperFamilySSF466891.12E-12862IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-51063IPR009057Homeodomain-like
SMARTSM007178.6E-91264IPR001005SANT/Myb domain
CDDcd001674.32E-81558No hitNo description
PfamPF002494.0E-81558IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MSSNFLTNSR CSSSSWTPKQ NKTFEKALAK YDQDTPDRWH NVAKAVGGKS AEEVKLHYDA  60
LVRDLKDIES GRYPYPYPSG SNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-26676171RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.118701e-141boll| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457904.12e-44PREDICTED: protein RADIALIS-like 3
RefseqXP_016678633.12e-44PREDICTED: protein RADIALIS-like 3
RefseqXP_017648656.12e-44PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN03e-32RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A2P5X5Z61e-54A0A2P5X5Z6_GOSBA; Uncharacterized protein
STRINGGorai.007G050400.12e-55(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-34RAD-like 6