PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0447
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 224aa    MW: 24222.7 Da    PI: 8.4291
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0447genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.98.7e-302103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+ ++     p++q  ++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  Gh_A11G0447   2 SCNGCRVLRKGCSDSCILRSCLqwidnPESQGFATLFVAKFFGRAGLMSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWAGNWHVCQAAVE 99 
                  6*************************99********************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Gh_A11G0447 100 TVLR 103
                  9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4471107IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDSCILR SCLQWIDNPE SQGFATLFVA KFFGRAGLMS FISAVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWAGN WHVCQAAVET VLRGGTLRPI PELHAPTESN  120
EASEAAGTAD MWKLQETATS LNSNCRFSTS RSKVSSHKRR TIGELKKLQP SDLDLCLTPS  180
FKGNRVLDNR RPGTPSMISD ESVTTATCTE SGLAGQGKLL NLFV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708970.11e-165PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE86e-80LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A1U8L2T41e-163A0A1U8L2T4_GOSHI; LOB domain-containing protein 39-like
TrEMBLA0A2P5Y0D61e-163A0A2P5Y0D6_GOSBA; Uncharacterized protein
STRINGGorai.007G056300.11e-151(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-82LOB domain-containing protein 39