PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0468
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 210aa    MW: 24155.4 Da    PI: 11.1245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0468genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-104994454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +h+++Er RR+ri + f+ Lr++lP++      K++Ka++L ++v+ +++L
  Gh_A11G0468 49 KHKMAERHRRKRISQQFDMLRTILPNL-----IKMDKASVLGETVRQLREL 94
                 6*************************9.....6************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.3484594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-84899No hitNo description
Gene3DG3DSA:4.10.280.109.4E-1349103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-84994IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1349104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1151100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.55E-5131198No hitNo description
Gene3DG3DSA:3.30.70.2602.0E-4134182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVRLKQLEQD IQQHLRRYRD SISTIDFSFK SLKKVTKPKA EANIANALKH KMAERHRRKR  60
ISQQFDMLRT ILPNLIKMDK ASVLGETVRQ LRELKNRVKE MKGASNGSLE CVLPGDLNSL  120
SFGFSEKDGN LVKATFSCDD RPELIADLTR EIRKVNGTVV RAEMVFIGGR NKSVLWIKGF  180
SGNERMGMLK RALKMAIDIP KKNWKPRFNI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016681150.11e-154PREDICTED: transcription factor bHLH131-like
TrEMBLA0A1U8ISV91e-152A0A1U8ISV9_GOSHI; transcription factor bHLH131-like
TrEMBLA0A2P5XWZ21e-152A0A2P5XWZ2_GOSBA; Uncharacterized protein
STRINGGorai.007G059100.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.19e-32bHLH family protein