PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0524
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 348aa    MW: 38726.5 Da    PI: 4.4666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0524genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.47.2e-5061341129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtd elv++yLk+kv g+kl l +vi++vd+yk+ PwdLp  +++k+++ +wyf+++ +kkya+g+r nrat  gyWkatgkd++v+  +
  Gh_A11G0524   6 LPPGFRFHPTDVELVMYYLKRKVLGQKLLL-NVIAKVDVYKFAPWDLPdmSCMKTGDLKWYFYCPIEKKYARGDRVNRATIFGYWKATGKDRPVKY-N 101
                  79*************************988.99**************96448899999**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +e+vg+ ktLvf+kg+ap+g +tdWvmheyrle
  Gh_A11G0524 102 DEVVGMIKTLVFHKGKAPRGDRTDWVMHEYRLE 134
                  99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-573156IPR003441NAC domain
PROSITE profilePS5100552.3656156IPR003441NAC domain
PfamPF023654.7E-257133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGKNALPPGF RFHPTDVELV MYYLKRKVLG QKLLLNVIAK VDVYKFAPWD LPDMSCMKTG  60
DLKWYFYCPI EKKYARGDRV NRATIFGYWK ATGKDRPVKY NDEVVGMIKT LVFHKGKAPR  120
GDRTDWVMHE YRLEEKILAD RGPVQDMYML YVVFKKDGLG PRNGSQYGAP FKEEEWSDDE  180
QADLPGAGSL CGLSTVAVGG DNSSCVPESV CVGPSVESSG WCTQPSMMGH TNGDVNVTTA  240
IDTNAYAAPT CPDAPEVQVV AVAEDVPTLL EAPQPALVPQ DQESNDNMLS MLEYFFEEDA  300
FGTHEGQRRG NATDSSFKDT PVSDEDDISN LLASFTDVDN SNNWSYPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-46613315140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.60030.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106470.0KC110647.1 Gossypium hirsutum NAC protein 12 (NAC12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630805.10.0PREDICTED: NAC domain-containing protein 82-like
SwissprotQ9FY823e-91NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A2P5XJX60.0A0A2P5XJX6_GOSBA; Uncharacterized protein
STRINGGorai.007G065300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-93NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]