PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0712
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 457aa    MW: 51037.3 Da    PI: 8.2507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0712genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001785102219
                  EETTTTEEESSHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                  +C++Cgk F ++ ++  H
  Gh_A11G0712  85 VCENCGKEFFSWKSFLEH 102
                  6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.52E-51036No hitNo description
SMARTSM003550.481335IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7251335IPR007087Zinc finger, C2H2
PfamPF139124.1E-41535IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SMARTSM0035528084104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.84E-6221244No hitNo description
SMARTSM003550.13222244IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-9222246IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076222249IPR007087Zinc finger, C2H2
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
SuperFamilySSF576676.84E-6288315No hitNo description
PfamPF139122.4E-13292316IPR007087Zinc finger, C2H2
SMARTSM003550.44293315IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369293315IPR007087Zinc finger, C2H2
PROSITE patternPS000280295315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAFIVDQQSE FKYFCKICNK RFGCGRALGG HMMAHGIGDE SRFIDDDDLA SDWEDKLLEG  60
NVVPPNNERM YRLRTNPNRL KSCRVCENCG KEFFSWKSFL EHGKCSSRPR DIAESLVSSQ  120
GSEGDDDGIT RRGSSGYCSK RKRSLRSEVG NFNAFSSPSS EEDLANCLMM LSNATVVPLV  180
TEPEESCTSA SKEDERRNTM NFSTHAIACR PRVPTVKAKG LFECKACKKV FNSHQALGGH  240
RASHKKVKGC FAARVDDSLA DVDHHGFFLK KPTSTFRFDN TLASTSKKKS KVHECSICHR  300
VFSSGQALGG HKRCHWITSN SPVETSSLVK FHQLQHQVQQ IQQTQRPNFV DDSEPLDLNL  360
PAPVDKLVRR NHIHPSSFDV STKIYLQPCS SIDATEKEDN QNHLQVDNAN NNCNNSKQNE  420
EDKAKSKLKL AKLSELKDIN MSGGSSPWLQ VGIGSDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694721.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1U8JWR90.0A0A1U8JWR9_GOSHI; zinc finger protein ZAT9-like
STRINGGorai.007G088600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-32C2H2-like zinc finger protein