PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G0849

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 445aa MW: 48234.1 Da PI: 6.6898

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G0849	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	72	8.7e-23	326	388	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+ Gh_A11G0849 326 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 388 89*******************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	4.2E-33	58	151	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	1.0E-18	179	305	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-18	320	385	No hit	No description
SMART	SM00338	8.4E-21	326	390	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-20	326	388	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.128	328	391	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.19E-11	329	382	No hit	No description
CDD	cd14702	4.61E-23	331	380	No hit	No description
PROSITE pattern	PS00036	0	333	348	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MGSARIDGPT QPPTVPSLIY GGFVHFQEKE ESRVSDFKLT ERGEPTSIKG FTFGALTMGN 60 NDEGKSSKSD KSSSPVPTDQ NNIHVYSDWA AMQAYYGPHV NMPPYYSSAV ASGHAPPAYM 120 WGLTQPMMPP YGAPYATIYS HGGVFAHPAV PLVLDITSSI LMQAAGPVET PVKSPGNTEQ 180 GLMKKLKGFD GLAISIGNGT AKNAEGRAKP RPSHSVETAG STDGSDGNTT GTDQSRWKRS 240 REGTPTLGMT PFFTVEDEKI EAKSYQVAAG EVTATISPKP IGTVVSPGMT TGTILELRNT 300 PNKNAMSSAM GVHCGVMPTE VWLQNERELK RERRKQSNRE SARRSRLRKQ AETEELARKV 360 ESLTSENAAL RSEINQLTEM SEKVRLENAI LVEELKNAQL GHGQENVLNK KEDKEDEMCE 420 KKSDSGAKLH QLLDPSPRDD VVAAG

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MGSARIDGPT QPPTVPSLIY GGFVHFQEKE ESRVSDFKLT ERGEPTSIKG FTFGALTMGN  60
NDEGKSSKSD KSSSPVPTDQ NNIHVYSDWA AMQAYYGPHV NMPPYYSSAV ASGHAPPAYM  120
WGLTQPMMPP YGAPYATIYS HGGVFAHPAV PLVLDITSSI LMQAAGPVET PVKSPGNTEQ  180
GLMKKLKGFD GLAISIGNGT AKNAEGRAKP RPSHSVETAG STDGSDGNTT GTDQSRWKRS  240
REGTPTLGMT PFFTVEDEKI EAKSYQVAAG EVTATISPKP IGTVVSPGMT TGTILELRNT  300
PNKNAMSSAM GVHCGVMPTE VWLQNERELK RERRKQSNRE SARRSRLRKQ AETEELARKV  360
ESLTSENAAL RSEINQLTEM SEKVRLENAI LVEELKNAQL GHGQENVLNK KEDKEDEMCE  420
KKSDSGAKLH QLLDPSPRDD VVAAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	348	RRSRLRK
2	342	349	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.7389	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269\|PubMed:8672884}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627585.1	0.0	PREDICTED: G-box-binding factor 3-like isoform X1
Swissprot	P42776	1e-114	GBF3_ARATH; G-box-binding factor 3
TrEMBL	A0A2P5W3C9	0.0	A0A2P5W3C9_GOSBA; Uncharacterized protein
STRING	Gorai.007G105100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3571	26	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	3e-97	G-box binding factor 3

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]