PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0891
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 171aa    MW: 19463.5 Da    PI: 5.2824
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0891genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.3e-3916114199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaC++lrr+C ++C+lapyfp +++ +fa vhk+FGasnv+k+++ ++e++reda+++lvyeA ar+rdPvyG++g i +lq+ +++l+ +l+++k
  Gh_A11G0891  16 PCAACRMLRRRCDSNCILAPYFPCDEMDRFAKVHKVFGASNVIKMIQMVEETNREDAVKALVYEATARMRDPVYGSTGAICQLQKMVQELEMQLESTK 113
                  7*********************************************************************************************9988 PP

       DUF260  99 e 99 
                  +
  Gh_A11G0891 114 A 114
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.50115116IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3916113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGLESLIVTR PKTHQPCAAC RMLRRRCDSN CILAPYFPCD EMDRFAKVHK VFGASNVIKM  60
IQMVEETNRE DAVKALVYEA TARMRDPVYG STGAICQLQK MVQELEMQLE STKARVLELQ  120
QQKDQLWSVL TNVNHLELLS PINGGDNFCL GYDDSIAYDP DKFPVVGDWI F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3691174112LOB family transfactor Ramosa2.1
5ly0_B5e-3691174112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5819289e-73JX581928.1 Gossypium hirsutum clone NBRI_GE14664 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709351.11e-128PREDICTED: LOB domain-containing protein 25-like
SwissprotQ9SK086e-40LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A1U8L3Z21e-126A0A1U8L3Z2_GOSHI; LOB domain-containing protein 25-like
STRINGGorai.007G110000.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1863068
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.13e-42LOB domain-containing protein 11