PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0922
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 414aa    MW: 47294.6 Da    PI: 6.5159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0922genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14228279155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gh_A11G0922 228 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 279
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.45E-12226283No hitNo description
PROSITE profilePS5088816.126227278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-17227295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-11228279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-15228291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11233284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLVTERGTQK EKKKEFKAFT STTAKLFMER LQGPINPYFL GEHLEVECLE QGFISCERLK  60
LGEEEEEEEA HFSIPSFEEK MPFLQMLQSV ESPQLFAFKE PNFQTLLRLQ HMKKPWELNN  120
NPFIPEMETQ VQGLELESCV THETVLDLHS PVKSETKELK KSPPSSSCVE VLSSGSNQHQ  180
QKSDNCSREP NLGSSPQKIF TKSPPITRER RKRKRTKAAK NKEEVESQRM THIAVERNRR  240
RQMNDYLNSL RSLMPPCYIQ RGDQASIIAG AIDFVKELEQ LLQSLEAQKR TRKVEESNNS  300
MSKPAMETHQ QEYENGSEDG HCGEEVKAES KTGAAEVEVN VIHNHVNLKI QCSRRAGQLI  360
HAIVTLETLR LTVLHLNITN SQASVLYSFN LKMEDDSALR SADEITAAVH QIFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214RRKRKR
2228239RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708353.10.0PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBLA0A1U8L4Q60.0A0A1U8L4Q6_GOSHI; transcription factor bHLH67-like isoform X1
STRINGGorai.007G113200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-50bHLH family protein