PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0931
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 394aa    MW: 45221.4 Da    PI: 5.0834
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0931genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.42.1e-3451453128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkk...lelee.......vikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                  +GfrFhPtd e + e L +kv+ ++   +   +       vi+++ di+k+eP +Lp  +++ ++++ wyfF++ + ky+++krknr+tk+gyW+ tg
  Gh_A11G0931   5 KGFRFHPTDAEAI-ELLWEKVQLDRdsfV---QlgdslapVITQLnDICKFEPAELPgrSELVSGDNVWYFFCSPRYKYRNSKRKNRVTKKGYWNPTG 98 
                  7************.999999999995551...34455655899998***********5336677999******************************* PP

          NAM  88 kdkevlsk..kgelvglkktLvfykg....rapkgektdWvmheyrl 128
                  k ++++++  +++ +g+++ Lvfykg    +++k+++t W+mhe++l
  Gh_A11G0931  99 KFRTIVTTcdGKKITGTRRALVFYKGrvcvKNKKANNTLWIMHEFEL 145
                  ******99878888**********753333789999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.6093163IPR003441NAC domain
SuperFamilySSF1019414.97E-343163IPR003441NAC domain
PfamPF023652.0E-175145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MNYVKGFRFH PTDAEAIELL WEKVQLDRDS FVQLGDSLAP VITQLNDICK FEPAELPGRS  60
ELVSGDNVWY FFCSPRYKYR NSKRKNRVTK KGYWNPTGKF RTIVTTCDGK KITGTRRALV  120
FYKGRVCVKN KKANNTLWIM HEFELTLNLP NQKSLILCKL KKKYGKVNVS IGEEEQSNQY  180
LPSSNLENHC TNNGIPKEQL NSTEQVAFNE NSGIQSELVN NEQTIDEFVD SLLIKNDEFY  240
SNQPYFVHDK QDPKVYSDFQ IYNANTDIPK NQEGFSDLTY QKLRTPNDRV WTMNEVGSSS  300
ALVANDPSYS EGDNNQHDTY FAEQGSILAF ENHVLVDSIS MGGSGFDEFL HDGLFMAELS  360
PLPKPPKNPD EVQNHQFSTN EQDEFWNSIF ITTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-17616320165NO APICAL MERISTEM PROTEIN
1ut4_B1e-17616320165NO APICAL MERISTEM PROTEIN
1ut7_A1e-17616320165NO APICAL MERISTEM PROTEIN
1ut7_B1e-17616320165NO APICAL MERISTEM PROTEIN
4dul_A1e-17616320165NAC domain-containing protein 19
4dul_B1e-17616320165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710832.10.0PREDICTED: NAC domain-containing protein 4-like isoform X1
TrEMBLA0A1U8L8A70.0A0A1U8L8A7_GOSHI; NAC domain-containing protein 4-like isoform X1
STRINGGorai.007G114400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2221145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-24NAC domain containing protein 36