PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0932
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 316aa    MW: 35051.4 Da    PI: 4.325
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0932genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.32e-0853996128
          NAM  96 kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                  ++ ++g k+tLvf+kg  ++++  kt W+mhey+l
  Gh_A11G0932   5 QDIEIGKKRTLVFHKGrvNDNTKMKTGWIMHEYQL 39 
                  55679*********98334555669********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.148157IPR003441NAC domain
SuperFamilySSF1019413.4E-10557IPR003441NAC domain
PfamPF023651.1E-4939IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MARDQDIEIG KKRTLVFHKG RVNDNTKMKT GWIMHEYQLT ATLPNQATFV LCKLKRKFGK  60
AEVSCIEEGQ PSHYLPPNLG NYIANNANQA EAARCLTANS DPNEMLTQLE ALNDHEELEH  120
QSIEWWNSYV GGGFPKHDGS GDFGTHGAEN AIPNHHLLTE ITMGQEVLQD QSGTNEQDIS  180
NLGDLGPGDE RSNQHKLVMD DDGCNMPSNS ENDTAEDSVK MDLSTFAGPS TDEEVFAGLE  240
ALPEAQGNRI GQMIDDWILD EGIRNAFDNQ CSREEQNPTP ITGGCNLSFA PDALNIPRKR  300
SRTDYCYEGF GFDTNQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.248280.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472480.0KC847248.1 Gossypium hirsutum NAC domain protein NAC71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708579.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A1U8L6170.0A0A1U8L617_GOSHI; NAC domain-containing protein 86-like
TrEMBLA0A2P5WGI90.0A0A2P5WGI9_GOSBA; Uncharacterized protein
STRINGGorai.007G114500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1973146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-09NAC domain containing protein 62