PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1068
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 442aa    MW: 47926.9 Da    PI: 8.4539
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1068genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.6e-114975127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++ + C +++rtG+C yG+rC+++H++
  Gh_A11G1068 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75
                 57899********************96 PP
2zf-CCCH39.68.6e-1394120127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+f+++tGtCk+G++CkF+H++
  Gh_A11G1068  94 PGEPTCQFYLKTGTCKFGASCKFHHPK 120
                  57899********************96 PP
3zf-CCCH27.84.3e-09141166227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG+Ck+  +CkF+H++
  Gh_A11G1068 141 GEKECSYYLKTGHCKFDTTCKFHHPQ 166
                  7899********************97 PP
4zf-CCCH32.21.8e-10294320127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++rtG Ck+G+ C+++H++
  Gh_A11G1068 294 PGEPECQYYLRTGDCKFGSCCRYHHPR 320
                  5799*********************96 PP
5zf-CCCH33.95.2e-11343366427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                   +C+f++++G+Ck+G++CkF H++
  Gh_A11G1068 343 QPCSFYLQNGHCKFGSTCKFDHPM 366
                  69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3144876IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-74875IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.02393121IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-693120IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-599120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61139167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6141166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361293321IPR000571Zinc finger, CCCH-type
SMARTSM003560.004293320IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99339367IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6342370IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8343366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5343365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MELYSRIQPR NGSQSGYQSE WSPAGPETGL EESMWPLSLG GTESYPERPG VPDCVYYMRT  60
GFCGYGNRCR YNHPRNPAWV EAAVRATGVY PERPGEPTCQ FYLKTGTCKF GASCKFHHPK  120
QGYQSFSQVP LNIYGYPLRP GEKECSYYLK TGHCKFDTTC KFHHPQSAGT SIPASAPQFF  180
QPVQSPSVPI TEQYGGASTS ARPPILPGSY VQGAYGHVLF SPGVVPIPGW SHYSAPVSSV  240
VSPGVQPAVG ATSLYGLTQL SSSTPSRAGP YLSLPSSMSP SSGNQNNQTF PERPGEPECQ  300
YYLRTGDCKF GSCCRYHHPR DKVAPWTNCI LSPMGLPLRP GGQPCSFYLQ NGHCKFGSTC  360
KFDHPMGTMR YSPSLSSLID MPVAPYPVGS LLATLPPSST SSELRPELSS GSKKDSYLSR  420
IPSSSISSSS VVPEARDKVV AV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710921.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X4
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1U8L8J30.0A0A1U8L8J3_GOSHI; zinc finger CCCH domain-containing protein 32-like isoform X4
STRINGGorai.007G130500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-179C3H family protein