PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1271
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 197aa    MW: 22740.2 Da    PI: 6.7963
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1271genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.11.1e-1821107287
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  Wt+qe+l Li+a++e++ +l+r+klk+ +W+ev   +       +    +++ qC++k+e+l++ry+ +++g  ++      ++py+d +ea
  Gh_A11G1271  21 WTHQETLNLIQAYQEKWYSLQRSKLKAWQWQEVVVTVavrcghLDDSPAKTALQCRHKMEKLRRRYRSERQGLASG-----AHWPYYDAMEA 107
                  ********************************99988888888777789999**********************97.....57*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.5E-1820108No hitNo description
SMARTSM005951.5E-628113IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSNISPVADP TPGKKSQPLP WTHQETLNLI QAYQEKWYSL QRSKLKAWQW QEVVVTVAVR  60
CGHLDDSPAK TALQCRHKME KLRRRYRSER QGLASGAHWP YYDAMEALEH EPLPISARPL  120
ASLVPTRGLN FYSENGHEAG NNYYSNYVVE EEQEDYYYDD EEENNQFSKS RSINNILRRP  180
SAVNRFSGFL SGGEGKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709044.11e-147PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A1U8L7B61e-146A0A1U8L7B6_GOSHI; trihelix transcription factor ASIL1-like
STRINGGorai.007G154900.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-38Trihelix family protein