PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1390
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 539aa    MW: 60578.6 Da    PI: 5.8798
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1390genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.61.9e-1401695391374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L+ cA+a+s++dl +aq+l+ +l+ ++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s++ l+++++++ev+P+lkf+++ a
  Gh_A11G1390 169 LKQVLVFCAKAMSDNDLLMAQWLMDELRRMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPK---SADLLSYMHILYEVCPYLKFGYMSA 263
                  5799*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+A+ ++vpfef++ +a +  +++ e+L
  Gh_A11G1390 264 NGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVGKRLSKLARYFKVPFEFHA-AAMSGCEVQREHL 360
                  ***************************************************998899999************************.89999******** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn++++lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rfle+l+yy+a+f+s++++lpre++eri vE+++l+r
  Gh_A11G1390 361 QVRPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFFARFLETLNYYTAMFESIDVTLPREHKERIDVEQQCLAR 458
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++vn++acegaer+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g+l+lgW++r Lv+ +aW+
  Gh_A11G1390 459 DVVNIIACEGAERVERHELLGKWRSRFRMAGFTPYPLSSLVNATIKTLLENYCDR-YRLEERDGALYLGWMNRDLVASCAWK 539
                  *****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.328143520IPR005202Transcription factor GRAS
PfamPF035146.5E-138169539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQASQQHRSS VMASRLYRQI KQEVEPEPYW FPQLPPIDPS LCYSDSSHEF HFTVESSNEN  60
FCTLESSSAN GSYNAYNSTS LVGFSPNGSP TSQQDSQSYP SDLHHSPDNN VGSPISGSCV  120
TDDVSDLRDK LKELETVMLG PDSDVIDSKT SPEMGTWRLV TDAISRGDLK QVLVFCAKAM  180
SDNDLLMAQW LMDELRRMVS VSGEPIQRLG AYMLEGLVAR LASSGSSIYK ALRCKEPKSA  240
DLLSYMHILY EVCPYLKFGY MSANGAIAEA MKDEDRVHII DFQIAQGSQW ITLIQAFAAR  300
PGGPPHIRIT GIDDSTSAYA RGGGLNIVGK RLSKLARYFK VPFEFHAAAM SGCEVQREHL  360
QVRPGEALAV NFAFMLHHMP DESVSTENHR DRLLRLVKSL SPKVVTLVEQ ESNTNTAPFF  420
ARFLETLNYY TAMFESIDVT LPREHKERID VEQQCLARDV VNIIACEGAE RVERHELLGK  480
WRSRFRMAGF TPYPLSSLVN ATIKTLLENY CDRYRLEERD GALYLGWMNR DLVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6417653825377Protein SCARECROW
5b3h_D6e-6417653825377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.165780.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709711.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016709712.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016709713.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016709714.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016709715.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1U8L5220.0A0A1U8L522_GOSHI; scarecrow-like transcription factor PAT1
STRINGGorai.007G167000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]