PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1568
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 655aa    MW: 74236.7 Da    PI: 5.9946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1568genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.73.7e-5661331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v s +
  Gh_A11G1568   6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNS-Q 101
                  79****************************.99***************6434555777**************************************.8 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ vg+kktLv+y+grap+g++tdWvmheyrl
  Gh_A11G1568 102 TRGVGVKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                  899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-634157IPR003441NAC domain
PROSITE profilePS5100561.3496157IPR003441NAC domain
PfamPF023652.6E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QTRGVGVKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECES ASTGFNDAYA LCRVFKKSAT TTPKIIGQHY STTVNNQIQI  180
TSEQSNSSLD LYSEGRCEES SDFGKPVDAC SSSILNRSSS IDDICDARDV KWMQCFSEDA  240
FGLINPSFST YATIPYAPSN VDVALECARL QQQMSLPPLE VEDFSQVGVA NHKVMMRTAP  300
MRETQHETDV LEEILSVAHA SQQLINQDAW GGSSSSNGHD FTFTNTMYQH QNQNNDQMNC  360
PLYTNQSLEG SSTRSTMVQG DRMVENLRWV GMSSKDFDQY CFMQENKVVP IQHISSFTDT  420
GVQGESGHDY NSIVINDTGI KDNEIEDISH GFIEGDHFLE EGNIEDLRSS PSYEVVEDIK  480
FNHGMLVSTR QVANTCFHQA LPSQTVKVHQ NPITATSYLQ FQVGKPEPDE ARYNKGKSFF  540
RKLYSFTKGK CTESLSFMKW CKDTASGFLC MAMLLLMRIF YLEFEEDMIS ERLVDIGLNA  600
KDSKKEKKGV AVFGYSLAKS NGRWNDFGLL MAILAFFLII SLVRCTLLAS ILILY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-58215711168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164141e-155JX616414.1 Gossypium hirsutum clone NBRI_GE61056 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675929.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A1U8IJ820.0A0A1U8IJ82_GOSHI; NAC domain-containing protein 86-like
STRINGGorai.007G188800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-154NAC domain containing protein 28