PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1643
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 1432aa    MW: 156880 Da    PI: 5.6676
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1643genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.5e-0614091432226
                   -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                   ++++C+ f+++G+Ck G++C++ H+
  Gh_A11G1643 1409 GQRICK-FYESGYCKKGASCRYWHP 1432
                   6899**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.71E-864123IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.0E-1064123IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.52969135IPR019787Zinc finger, PHD-finger
CDDcd155689.08E-1971116No hitNo description
SMARTSM002496.7E-771117IPR001965Zinc finger, PHD-type
PROSITE patternPS01359072132IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.101.7E-23292372IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.26E-19292368IPR003121SWIB/MDM2 domain
PfamPF022011.8E-14309367IPR003121SWIB/MDM2 domain
SMARTSM001510.004310372IPR019835SWIB domain
PROSITE profilePS5136023.943429561IPR004343Plus-3 domain
SMARTSM007193.5E-42429538IPR004343Plus-3 domain
SuperFamilySSF1590422.35E-30430558IPR004343Plus-3 domain
PfamPF031268.3E-23434536IPR004343Plus-3 domain
SuperFamilySSF552773.79E-16689748IPR003169GYF domain
CDDcd000723.22E-16692749No hitNo description
PROSITE profilePS5082914.959692746IPR003169GYF domain
SMARTSM004443.0E-15693748IPR003169GYF domain
PfamPF022137.0E-12694738IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.6E-18694748IPR003169GYF domain
PROSITE profilePS5010315.08414071432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.3E-614071431IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MDNSQLVGNA DVVVPGAAGA TAEAGNGVTV VEMSAGKRRR GRPPRNQVRT PSSSAPPPPP  60
QRKDEDDEED VCFICFDGGS LVLCDRRGCP KAYHPACIKR DEAFFKSKAK WNCGWHICST  120
CQKASYYMCY TCTYSLCKNC TKDADYVNVR GNKGFCGTCM RTIMLIENIA SDNKEMVQVD  180
FDDKTSWEYL FKVYWVLLKE KLALSLDELT NAKNPWKETA IMGPKGNSSG ELNNYSNAKG  240
TNMEKSCGDQ GDSYSKRRKT TRQQKLLNNV EYLGAENSGV MKGVPFPGGT NWATTELLEF  300
VAHMKNGDVS VLSHFDVQAL LLEYITRNNL RDPRQKSHII CDSRLVKLFG EERVGHFEML  360
KLLESHFLIQ DHSRAIDTVR GEAIEAAAIQ LAVDGNSDSQ PIIASDKRRK TRKKVNEKGQ  420
RANPDEYAAV DVHNMNLIYL KRNWIENLID DAEKIDGKVV GSFVRIKIPG NDQKQDFYRL  480
VQVVGTSKAE PYKIGERTTD IMLEILNLDK KEAVSINGIS NQEFTEDECQ RLYQRIRCGL  540
TKWFTVGEIL EKAMALQAVR VNDWLQSEIL RVTNLRDRAS EKGHMKEYPI ECIEKLQLLN  600
SPDERQRRLQ EIPDIHCDPD MNQYCKSLKV AVELNKKKEN NKPRDSGFTM KEKEPAFPLK  660
GSDDLNDIGS RGTSLGPHST GMELTVNNIE TDKIWHYQDP HGKVQGPFHI EMLRRWSMSG  720
HFPPDLRIWR ANEKQDNSIL LTDALDGWYG EAKQSFCNSC VPTEDIRVAS DDGCLSGAVD  780
GSGGTDLNVA QIESKQVEGT LNSTLNDTSS HYCGNNESVK STELSSQSSP CTATCTPVVD  840
VVNSDAVQKG SPLPTCDLVK GDNDLPGLPQ VSSSLPSSTL SDKPCGTQSH QFNNDHGVER  900
WDNGSINMGE NMDKTSEGQN IAGSAKLDDS EGKSGRSSGQ SWRSSPLNDA SNGWDSNSGL  960
ISLARALEAS EHNQDIDFSD IPTSTSKLNQ EDSKGQANES KLSLSLNVPH RDSGPSWSTT  1020
SSLVGNSQIA EIFGEWGGHS STPAKPSAKG WDSNLVPESS FKPSIMGSDH AAAPTSGSDQ  1080
LTHSSPPDPA NNAFAWDPIV PEPNEGDESV SDLLAEVEAM ESLNGLTSPT SIMHCDGELA  1140
QGSEPDCFSP VGRLSPAPDP GKSDAFSSTN DLQMPSQSTV TTEPFRISQS EVLDAQKSSG  1200
RHSSTSAEIN ENTRPRDVSV NQYKVGSNMQ PPAPPVTTWG MDTIDTAWGS GPETTSTNCG  1260
AVHGNKNFSW RGLGEGNTNV SRGTGQGTFQ ENSSINAGTS GENLAYWGSQ QRYVSPRHRD  1320
FQGRDSSSVG GSDFHGRDSS SARGSDFQGK DSSSARGSDF QGRDSSSVRG SDFLGRDSSF  1380
ARGRSSSNRH SSYYGGSNGG GTFRSPPKGQ RICKFYESGY CKKGASCRYW HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gnd_C2e-16691441587Histone-lysine N-methyltransferase NSD3
4gne_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gnf_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gng_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gng_D2e-16691441587Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.1911e-131boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO841732501e-131
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5769502e-60JX576950.1 Gossypium hirsutum clone NBRI_GE8679 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630781.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
RefseqXP_017630782.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A0D2SGM00.0A0A0D2SGM0_GOSRA; Uncharacterized protein
STRINGGorai.007G197200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding