PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1675
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 200aa    MW: 23021.9 Da    PI: 7.7635
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1675genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1414.1e-1365122562
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  ++ +r+++NReAArrsR RK++ ++ L   v +L  eN +   +++  ++ + + ++e
  Gh_A11G1675  65 RKRKRMASNREAARRSRMRKQKHLDDLMGQVSQLAHENNQILANINITTQIYLNIEAE 122
                  5789***********************************9999998877777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-1561125IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.40463110IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.6E-1163140No hitNo description
PfamPF001704.6E-1065110IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.06E-1265117No hitNo description
CDDcd147022.99E-1866116No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSPVLCEILL SGLMINSTLR RRTHLVQSFS VVFLYWFYVT GSSSSSATRR SSSSVEEFQQ  60
VLNERKRKRM ASNREAARRS RMRKQKHLDD LMGQVSQLAH ENNQILANIN ITTQIYLNIE  120
AENTVLRAQM AELSTRLQSL NEINDFISSN NGVFGYDHPN NYEADHDHHH HQVNIDTFMN  180
NPWGCFYGNQ PIIASADMIM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16485RKRKRMASNREAARRSRMRKQK
27784RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.104642e-43boll| leaf| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot meristem during vegetative to reproductive phase transition. {ECO:0000269|PubMed:22319055}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00267DAPTransfer from AT2G18160Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016682613.11e-117PREDICTED: bZIP transcription factor 53-like
SwissprotQ9SI151e-42BZIP2_ARATH; bZIP transcription factor 2
TrEMBLA0A0D2TI921e-125A0A0D2TI92_GOSRA; Uncharacterized protein
STRINGGorai.007G200600.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.17e-45basic leucine-zipper 2
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]