PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1744
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 348aa    MW: 40498.1 Da    PI: 9.9195
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1744genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-15441231499
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++l++pk+f+e++ +k     t+ l+ +sg  W+v++  +k  +++v+++GW  Fv++++L+    +vF+++g+s f  +v +f++
  Gh_A11G1744  44 KILRIPKTFTENFREK--LLGTIHLRGPSGFMWTVEV--EKMFNHVVFQNGWPTFVEEHRLEKAYLLVFRYIGNSAF--NVVIFDS 123
                  459*******777644..4559***************..***********************************999..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.66131124IPR003340B3 DNA binding domain
SuperFamilySSF1019361.63E-1938126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-1941126IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-1142124IPR003340B3 DNA binding domain
PfamPF023623.5E-1346123IPR003340B3 DNA binding domain
CDDcd100175.50E-1446122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLLKDKIFKL HAKPRMAATT QKCRVLEKNK YWKEFESNRH QFFKILRIPK TFTENFREKL  60
LGTIHLRGPS GFMWTVEVEK MFNHVVFQNG WPTFVEEHRL EKAYLLVFRY IGNSAFNVVI  120
FDSSGCEREG SYFVREHTNA CSNDGCVLDK EDGEDCEDII DLEKPHIQKR KIKKGRGRPS  180
SKAVDADNRH QSKGREDKQP RVGKSAVERE VLIDGDDYED IIDLEKIHKQ KKIKKRRGRP  240
SSKAVDTNNH HQSKATEKKR PRVIKSAVEG EVSIDESDGA PGCAMEDCVE QNLQGSYSLY  300
FISKRREITQ EEKQRPRKLS RQYPSTRPSF TLVMKDSHVY KSFQVVKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677850.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A1U8IID00.0A0A1U8IID0_GOSHI; B3 domain-containing transcription factor VRN1-like isoform X1
STRINGGorai.007G208600.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2512634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein