PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1811
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 113aa    MW: 12672.9 Da    PI: 4.4228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1811genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.77.5e-1176102127
                  ---SS-EEEEEEE--TT-SS-EEEEEE CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrC 27 
                  +dDgy+WrKYG+K+vk+s++p  + rC
  Gh_A11G1811  76 VDDGYKWRKYGKKSVKNSPNPSYFPRC 102
                  59*******************877799 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-1069103IPR003657WRKY domain
SuperFamilySSF1182903.53E-1070104IPR003657WRKY domain
PROSITE profilePS5081112.64571102IPR003657WRKY domain
SMARTSM007740.009876111IPR003657WRKY domain
PfamPF031064.9E-777103IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MDFSPNGHSN PKPNSIFFPE NPDPMADFEI SDYLILDAGV FEDDTSEKGM GVANESETSG  60
ASATPEHSNM QKIEAVDDGY KWRKYGKKSV KNSPNPSYFP RCWNFKPLDS FNI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492284.17e-46PREDICTED: probable WRKY transcription factor 51 isoform X2
TrEMBLA0A0D2TKU22e-44A0A0D2TKU2_GOSRA; Uncharacterized protein
STRINGGorai.007G245200.13e-45(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57112747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.17e-10WRKY DNA-binding protein 50