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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_A11G1992 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 368aa MW: 42089.5 Da PI: 6.322 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 75.6 | 3.9e-24 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
k+ien + r++tf+kR+ g+ KKA+ELS+LCd+eva+iifs+ gkl+ +
Gh_A11G1992 9 KKIENRTYRHITFAKRKSGLVKKAYELSTLCDIEVALIIFSPAGKLFLF 57
68*******************************************9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 7.8E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 27.403 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.35E-26 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.8E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.4E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.8E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.8E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 368 aa Download sequence Send to blast |
MGRVKVELKK IENRTYRHIT FAKRKSGLVK KAYELSTLCD IEVALIIFSP AGKLFLFDGK 60 KRIEEILAEY MELPARRRGW YGFLMEVLRL CACVLFQLIR RIVTQLNVEA SFYGVIRRDK 120 DSENLLKEIQ NGIVVCSTEL EQVERNLQFF LRNPSSLDTI TEVMYHEMIL EETLELVHEI 180 LIMYVSFLIL QRVLEANEFV GPTRMEFGVN MVPNLVDPSE IPLHAQNASA QACLARGLNY 240 NIMNWPSLND VQAPTNFTDQ SIGLQQPLRN LAEPLVERLP FPMQLPSRMR SHHLQGHGHL 300 GGNEVSTQPN MNFDDYVYRP APPIVNANFP PMNMDTIPQA APRGSEAEAE NWRSGNSSNP 360 DSRLWFLG |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6byy_A | 2e-15 | 1 | 72 | 1 | 71 | MEF2 CHIMERA |
| 6byy_B | 2e-15 | 1 | 72 | 1 | 71 | MEF2 CHIMERA |
| 6byy_C | 2e-15 | 1 | 72 | 1 | 71 | MEF2 CHIMERA |
| 6byy_D | 2e-15 | 1 | 72 | 1 | 71 | MEF2 CHIMERA |
| 6c9l_A | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-15 | 1 | 72 | 1 | 71 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HM236446 | 0.0 | HM236446.1 Gossypium hirsutum MADS30 mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017629886.1 | 0.0 | PREDICTED: MADS-box transcription factor 7-like | ||||
| TrEMBL | A0A1U8IYK5 | 0.0 | A0A1U8IYK5_GOSHI; MADS-box transcription factor 7-like | ||||
| STRING | Gorai.007G219600.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM17254 | 9 | 10 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G22130.1 | 4e-30 | AGAMOUS-like 104 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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