PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2041
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 383aa    MW: 42096.2 Da    PI: 7.7318
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2041genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-17120165147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W t Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
      Gh_A11G2041 120 RGHWRTAEDAKLKELVAQYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 165
                      899*****************************.***********996 PP
2Myb_DNA-binding52.61e-16172215146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r++++ eE+e+l+ a++ +G++ W+ I+r ++ gRt++ +k++w+ 
      Gh_A11G2041 172 RKAFSDEEEERLLSAHRVYGNK-WAMISRLFP-GRTDNAVKNHWHV 215
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.731115166IPR017930Myb domain
SMARTSM007171.3E-14119168IPR001005SANT/Myb domain
PfamPF002493.3E-16120165IPR001005SANT/Myb domain
SuperFamilySSF466891.61E-27120213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-26121173IPR009057Homeodomain-like
CDDcd001671.40E-13123164No hitNo description
PROSITE profilePS5129424.973167221IPR017930Myb domain
SMARTSM007178.2E-14171219IPR001005SANT/Myb domain
PfamPF002492.7E-13172214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-19174220IPR009057Homeodomain-like
CDDcd001677.08E-11174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSLPNLNNDF DCCSGVVKEM NFLAPPPILS PSVERDSTNP QMGFQIPSSL MEQHNKCLSF  60
EPLESRGTMR TAACDGKDGV LVVKKKGLAL NLGVEVDDVS NKNSGAVGGT KIGHTKLCSR  120
GHWRTAEDAK LKELVAQYGP QNWNLIAEHL EGRSGKSCRL RWFNQLDPRI NRKAFSDEEE  180
ERLLSAHRVY GNKWAMISRL FPGRTDNAVK NHWHVIMARK HREQSSFYRR RKPCSSSFAS  240
QAVPKGLDVT FQNNACSDQS TLSSNIDESA STCTDLCLTP SSAEVPLGFF SSFSPVLQMG  300
PSRTKENGDF GKLYGSGNVL YQQQGLMGVA NGVDQSTHSS DSEVTAAESV GTNKTNHSIE  360
SEDGNEKKIH NMRFIDFLGV GAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-351202207107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}.
UniprotTISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527280.0KM052728.1 Gossypium hirsutum LOF-like transcription factor LOF4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671248.10.0PREDICTED: transcription factor MYB46-like
SwissprotQ5NBM83e-74CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A1U8I4V30.0A0A1U8I4V3_GOSHI; transcription factor MYB46-like
STRINGGorai.007G253200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-71myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]