PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2165
Common NameNAC8
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 348aa    MW: 39480.4 Da    PI: 7.494
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2165genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM184.62.3e-57161431129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdee++++yL++kv ++++++ ++i evd++k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ kg 
  Gh_A11G2165  16 LPPGFRFHPTDEEIITHYLTEKVMNSNFSA-SAIGEVDLNKCEPWDLPKKAKMGEKQWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIFKGKGC 112
                  79**************************99.88***************99999*****************************************9*** PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                  lvg+kktLvfykgrapkgek++Wvmheyrle
  Gh_A11G2165 113 LVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 143
                  *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-6312167IPR003441NAC domain
PROSITE profilePS5100559.99916167IPR003441NAC domain
PfamPF023657.8E-3017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEAIVVNKG DELIDLPPGF RFHPTDEEII THYLTEKVMN SNFSASAIGE VDLNKCEPWD  60
LPKKAKMGEK QWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIFKGK GCLVGMKKTL  120
VFYKGRAPKG EKSNWVMHEY RLEGKFSYYN LPKGAKDEWV VCRVFDKNNT GTKKSPIPDH  180
HQLLRMNSYG DDFMDYASLP PLMDPTYNSN KPGSSCTFMD GGDNEFKAAI NNQTFLQVPP  240
NHPYGSSNIF NPQIPIQNPV FFHQATPTST YLHQGRTTAG TGLAGNDPAN RRCKVEQFSS  300
NQSMVSLSQD TGLSTEINNN EISSVVSKND MEFGISKSFE DLRCLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-541417315171NO APICAL MERISTEM PROTEIN
1ut4_B5e-541417315171NO APICAL MERISTEM PROTEIN
1ut7_A5e-541417315171NO APICAL MERISTEM PROTEIN
1ut7_B5e-541417315171NO APICAL MERISTEM PROTEIN
3swm_A5e-541417318174NAC domain-containing protein 19
3swm_B5e-541417318174NAC domain-containing protein 19
3swm_C5e-541417318174NAC domain-containing protein 19
3swm_D5e-541417318174NAC domain-containing protein 19
3swp_A5e-541417318174NAC domain-containing protein 19
3swp_B5e-541417318174NAC domain-containing protein 19
3swp_C5e-541417318174NAC domain-containing protein 19
3swp_D5e-541417318174NAC domain-containing protein 19
4dul_A5e-541417315171NAC domain-containing protein 19
4dul_B5e-541417315171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.74680.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO841697650.0
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141390.0JQ914139.1 Gossypium hirsutum NAC domain protein 8 (NAC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672976.10.0PREDICTED: NAC domain-containing protein 92-like
RefseqXP_017628334.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FK441e-120NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A1U8I4220.0A0A1U8I422_GOSHI; NAC domain-containing protein 92-like
STRINGGorai.007G267700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-123Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Shah ST, et al.
    Isolation and expression profiling of GhNAC transcription factor genes in cotton (Gossypium hirsutum L.) during leaf senescence and in response to stresses.
    Gene, 2013. 531(2): p. 220-34
    [PMID:24036432]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]