PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2224
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 418aa    MW: 46179.4 Da    PI: 5.9673
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2224genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.63.4e-34195249155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr+rWtpeLHe+F+eav+qLGGse+AtPk il+lm+v+gLt++hvkSHLQkYR+
  Gh_A11G2224 195 KPRMRWTPELHEAFLEAVNQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRT 249
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.615192252IPR017930Myb domain
SuperFamilySSF466891.79E-19193249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-31194250IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-25195249IPR006447Myb domain, plants
PfamPF002499.4E-11197248IPR001005SANT/Myb domain
PfamPF143792.0E-23282326IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MENSVSLQES SLAPSNGTLG NSSLSPSIVT DHMCASALPH VQHSHNPAFI SQSSRDLASL  60
LPLDASFSQS TASLIHTQGN KDVSWSLDRL QMFLDLPENT PAPNQLVESS TSVLASEDHN  120
KKTNWQEWAD DLINVVDPDW SKILDNTNVL NPRVELPKPS GDISKQQPQF HQNQLVPHGE  180
FSSHAYPSST APPTKPRMRW TPELHEAFLE AVNQLGGSER ATPKGILKLM NVEGLTIYHV  240
KSHLQKYRTA RYMPETSEGT SEKRITSIEE MKSIDLKTSI GITEALRLQV EVQKQLHEQL  300
EIQRNLQLRI EEQGRYLQMM FEKQKKVEDE KGGAPSSASD DLLAPLPGSK HPPCNNGKSD  360
SEALEQDHSR TGIGPGNAGT NEDKSSSGVS TKQKMPETES TVHDESGFSV SKRARTEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-30195252259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.65760.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627605.10.0PREDICTED: protein PHR1-LIKE 1 isoform X1
RefseqXP_017627606.10.0PREDICTED: protein PHR1-LIKE 1 isoform X1
TrEMBLA0A0B0MNA40.0A0A0B0MNA4_GOSAR; Myb family transcription factor APL
STRINGGorai.007G274700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.34e-93G2-like family protein