PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2296
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 682aa    MW: 77180.7 Da    PI: 6.5466
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2296genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-14128189268
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                  W+++evlaL+++r+++e+++ +       We+vs+k+++ gf+rs+ +Ckek+e+ ++++  i+ ++
  Gh_A11G2296 128 WSNDEVLALLKVRSSIENWFPEF-----TWEHVSRKLADLGFKRSADKCKEKFEEESRYFNSINCSK 189
                  ********************998.....9*******************************9988665 PP
2trihelix95.93.8e-30528616186
     trihelix   1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+++evlaLi++r ++ ++   +k     k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  Gh_A11G2296 528 RWPRDEVLALINLRCSLYNNGDHEKegtaIKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDINKKR-SLDSRTCPYFHQLS 616
                  8**************9998888653344499*******************************************8.9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071717124181IPR001005SANT/Myb domain
PfamPF138377.9E-10126189No hitNo description
PROSITE profilePS500906.133127179IPR017877Myb-like domain
SuperFamilySSF1014473.66E-6209217No hitNo description
SMARTSM007170.24525591IPR001005SANT/Myb domain
PfamPF138377.5E-19527616No hitNo description
CDDcd122034.70E-25527596No hitNo description
PROSITE profilePS500906.539528589IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MFDGVPDHLH QFIGASSASA RTTTTTTLLL PLSFTSSNGF TSFDPLFTSS SNSHHQQVPP  60
QLHHHHHQQQ QQQQQQQQQP QLLQSLHQQK NNEESTTSLV GMNMEINGRD QRSIAEPIDN  120
LHHHHHPWSN DEVLALLKVR SSIENWFPEF TWEHVSRKLA DLGFKRSADK CKEKFEEESR  180
YFNSINCSKN YRIFSELEEL YQAENPPPPP PPPPPPPPPH HHSQQQQVAV VADENNKNVE  240
KSREDEDNMG QNLEADSRNI DELYQTSPAN NTAMSSDQDN KKVVENKANY DDNKAAAAAN  300
NNKKRKRVKK LELFKGFCED IVNKLMIQQE EMHNKLIEDM VKRDEEKVAR EEAWKKQELD  360
RINQELELRA KEQAIAGDRQ ATIIKFLSKF SQTGSSKKQC FGRVNEDVVK VPSECSNPPI  420
ASSSPLVAVA ENPNPIVTDQ NKVDQVSTTS PSSMNLAHQN KQSMPISMTE SQAPQNPNPE  480
TPDTSSLAPQ NPNSVSAESN PLPPTSPLTV NKAPQNPTSN EKEDLGKRWP RDEVLALINL  540
RCSLYNNGDH EKEGTAIKAP LWERISQGML ELGYKRSAKR CKEKWENINK YFRKTKDINK  600
KRSLDSRTCP YFHQLSTLYS QGTLIAPSDG PENRSPLPEN HSKLPETGKD SCQRGDKDST  660
VHVSGGNETN MVIQVPGFEF EF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302309KKRKRVKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.146810.0boll
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642021e-152JX964202.1 Gossypium hirsutum clone NBRI_TRANS-471 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630950.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLA0A2P5Y8370.0A0A2P5Y837_GOSBA; Uncharacterized protein
STRINGGorai.007G283800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-105Trihelix family protein