PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2300
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 701aa    MW: 77025 Da    PI: 7.324
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2300genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.82.9e-15417455240
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+CnCk+skClk+YC+Cfaag +C e C+C dC+Nk 
  Gh_A11G2300 417 SCKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCLDCFNKP 455
                  689**********************************96 PP
2TCR53.45e-17502541140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+gCnC+ks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Gh_A11G2300 502 RHKRGCNCRKSSCLKKYCECFQAGVGCSPSCRCEGCKNSF 541
                  589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-18416457IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.385417542IPR005172CRC domain
PfamPF036386.6E-11419454IPR005172CRC domain
SMARTSM011143.8E-17502543IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12504540IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MDTPHKTQIT PTPTSSLSKF EDSPVFKYID SLSPIEQAKS SQTDNAFNSL AFLSPSSLFP  60
SPQINCHRES RFSVKRHHFS ADLSTRVLQS SNESNASQEA SKAAGQSGLY DEHPGCLSND  120
GSSKGISSDL FDKQSDLAVE LPGTSKYDCR SPDDNLEACD ALLKKTSLEV VEQERSPFQR  180
SRDEWKERQR SFENERDLRK IRRIKPSEEA AGCGWVAVVS DVADMLTVNT SIIHENSDGQ  240
DQRTVDSGTT SFISNIPEFS LDNANNLENA ESGDHQGSCK QNELGDSVTD QTSCILSTCL  300
PDKPVVTDSS LKKDDKGEKC SQLSRQRSIR RRCLVFEKSP GFGLHLNSLP NILKGGQNPP  360
NKSILSSMKM GEVPSDNGTV VIESSCEAPA SVGGTDADHN TPEKKRQKFE LVEESASCKR  420
CNCKRSKCLK LYCDCFAAGL YCIEPCSCLD CFNKPIHEKM VLETRKQIES RNPQAFAPKV  480
IRSTDSVLDT WGENNKTPAS ARHKRGCNCR KSSCLKKYCE CFQAGVGCSP SCRCEGCKNS  540
FGRKDGCDES GSDGEGLEAC EKNASDKNSH DIVTHKNAEE HRDLPVPSNI SRLPLAYSGK  600
FTGSFPHSIR SSSQLCNTPE RCSSESSLGQ SKFNSNLQAI PEDETPKVLK HKCLPLILKT  660
NSPPNSKRVS PPHHECSSST AQRSRKLILK SIPSFPSFCP P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1841953912120Protein lin-54 homolog
5fd3_B3e-1841953912120Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668664.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A1U8HZ580.0A0A1U8HZ58_GOSHI; protein tesmin/TSO1-like CXC 2 isoform X1
STRINGGorai.007G284200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17096510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.19e-71TESMIN/TSO1-like CXC 2