PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2494
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 678aa    MW: 73057.2 Da    PI: 6.1221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2494genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16415461455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Gh_A11G2494 415 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 461
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-20409470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-20409471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349411460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-17414465No hitNo description
PfamPF000101.0E-13415461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17417466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MPLSELYRMA RGKLDSSQDK NPSSSTDPSI VPEDDFVELV WENGQISMQG NGGNSSKMGK  60
FGVVNAVSSE VPMSAPSHDD DVVPWLKYSE NECCDMLPGL SGLCTNNIPT DSSLASFNQR  120
RQSISDSFSG SLNAAADFKQ GKLAKVPKPA DDEARLRSGT SESPQLCQVS SSYLGSRNLE  180
SIGNKPSHAF FRDTMGVQPS DETLRCVKMQ KQDKVAPCNN TVLMNFSHFS RPAALVKASL  240
QNIGAMARIE SKETGFAAST RGPVGSKAID SNIKLQKETF SRCHSSIVPM KTDIKQSEAK  300
SLDEPVAAEP NNANCEEYVP KSDKISSQVI GENASNFLPE SGKAVESVLA ASVCCENSVE  360
RASDDPVVNN LKRKNHDNEE FECPSEDAEE ESVGVKKAVP ARGGKGFKRS RAAEVHNLSE  420
RRRRDRINEK MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMR AGLYVPPMML  480
PTGMQHMHAT QMAYFSSMGF GMGLGMGFGM PFPETNTVAS ACPMVQVPPV CGAPFSSPGP  540
HLSGSTAFHE MPGANLRLYG LHGQGLPMSV PGAPLFPIPG GHLMKSAIGL SACGLGGPMD  600
NMDSATASSS KDLIQNINSQ VAQNTNINSS MNQTSTQYRT ANESFQQPAE VQENGRASEI  660
TGSVPFRSTD GDKKLPDR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419424ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638127.10.0PREDICTED: transcription factor PIF3-like isoform X1
TrEMBLA0A0B0P2E40.0A0A0B0P2E4_GOSAR; Transcription factor PIF3
STRINGGorai.007G309400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-76phytochrome interacting factor 3