PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2519
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 210aa    MW: 23183.9 Da    PI: 9.5617
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2519genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-192575155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr ++ +gr++AeIrdp++   ++r++lg+f++ae+Aa+a++aa+++ +g
  Gh_A11G2519 25 PRYRGVRKRP-WGRFAAEIRDPVK---KTRVWLGTFDSAEDAARAYDAAARQRRG 75
                 68********.**********654...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-132575IPR001471AP2/ERF domain
CDDcd000181.06E-162585No hitNo description
SMARTSM003809.7E-362689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-312684IPR001471AP2/ERF domain
PROSITE profilePS5103223.4722683IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-222685IPR016177DNA-binding domain
PRINTSPR003677.8E-112738IPR001471AP2/ERF domain
PRINTSPR003677.8E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MRRGRVSAAV AEKPAVENNG SLKEPRYRGV RKRPWGRFAA EIRDPVKKTR VWLGTFDSAE  60
DAARAYDAAA RQRRGPKAKT NFPVNSSNIA AFADDGRRLY PVGDFEDPEV NPQRPTRSSM  120
SSTVESFSGP RPAQLPPQKS TDFAAVSTRK YRPRTPPLAP EDCHSDCDSS SSVVDDGVIA  180
SSSRRRMLPF DLNFPPLDDA DDLQCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-212387269ATERF1
3gcc_A4e-212387269ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.130850.0boll| leaf
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5552881e-177KF555288.1 Gossypium barbadense ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634966.11e-147PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9LDE42e-53ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A2P5QWJ51e-147A0A2P5QWJ5_GOSBA; Uncharacterized protein
STRINGGorai.007G312200.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-41ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]