PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2610
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 283aa    MW: 30836.2 Da    PI: 4.5107
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2610genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.4e-06447542
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  C+ +e  e++  C +++  lC +C ++ H        H++vpl
  Gh_A11G2610  4 QCNVCEVAEAKVLCCSDEAALCLECDEKVHAAnklaskHQRVPL 47
                 6*****999*********************66899999999986 PP
2zf-B_box26.31.5e-085494337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 +++C+ ++e    +fC +++ llC++C  ++H        H
  Gh_A11G2610 54 MPTCDICQETSGFFFCLQDRALLCRKCDISIHTAnpyvssH 94
                 799******99*********************544555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.48147IPR000315B-box-type zinc finger
CDDcd000211.48E-7347No hitNo description
SMARTSM003362.5E-9447IPR000315B-box-type zinc finger
SMARTSM003361.6E-125299IPR000315B-box-type zinc finger
PROSITE profilePS501198.6885299IPR000315B-box-type zinc finger
PfamPF006432.9E-65494IPR000315B-box-type zinc finger
CDDcd000211.26E-75791No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRIQCNVCEV AEAKVLCCSD EAALCLECDE KVHAANKLAS KHQRVPLSSS SSYMPTCDIC  60
QETSGFFFCL QDRALLCRKC DISIHTANPY VSSHQRFVLT GVKVGLETTN DPVGSSSYIK  120
SPSSEKTSET KSDSMSKRDA PMSFISECNE VLPSNIGVEN SVPTKVSYGG GSTAGSIQSW  180
HMDDLFGLTG LNQSFGYMDN ELTKADSGKR GDSDSSPFLQ PAEEEVFDDE YMGQVPDSHW  240
AVPQVPSPPT ASGLYWPKDS HNQSDSAVFV PDISWSSVEN PFH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.200070.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639562.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM26e-88BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0B0PTA40.0A0A0B0PTA4_GOSAR; Uncharacterized protein
STRINGGorai.007G331700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-86light-regulated zinc finger protein 1