PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2752
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 228aa    MW: 25611.1 Da    PI: 6.4152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2752genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-1269121155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ +h++ Er RR+++N+ ++ Lr++lP++  ++ k+ls  +++ +  +Y+ +Lq
  Gh_A11G2752  69 KKLNHSASERVRRRKMNDLYSSLRSMLPPS--EQTKRLSIPATVSRMLKYMPELQ 121
                  6789*************************7..36666********9999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.15E-1267125No hitNo description
SuperFamilySSF474591.44E-1367135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.68768120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-1068124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-969121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-774126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MCALFPVCEW PLDAPIGHQH IISGALAGFE SFDDFHHFTF HDDMPRIQLN RPMLSAGDTG  60
DENPTTVDKK LNHSASERVR RRKMNDLYSS LRSMLPPSEQ TKRLSIPATV SRMLKYMPEL  120
QSQVEILLQK KQQILSTICK QDDHDLINQH HQNKTKLSDG FKVSPFTVSG TKVSDTEATI  180
QISTVGPTSQ GIPPLSPILY GLEEDGLFLT DASCFESFGG RVFYNLNF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5820211e-84JX582021.1 Gossypium hirsutum clone NBRI_GE14786 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630090.11e-167PREDICTED: transcription factor ORG2-like
TrEMBLA0A2P5W8361e-166A0A2P5W836_GOSBA; Uncharacterized protein
STRINGGorai.007G353000.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-41bHLH family protein