PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G2876

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 125aa MW: 14099.8 Da PI: 4.9298

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2876	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.4	1.6e-10	85	121	2	37
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 r+R+t+t+ ql++Le+ +e+ + +ps+++++e+A++l Gh_A11G2876 85 RQRWTPTPLQLQILENIYEQgTGTPSKQKIKEIASEL 121 89***************99***********998 PP
2	Wus_type_Homeobox	54.6	2.5e-18	84	125	2	43
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyG 43 ar+RWtPtp Q++iLe++y++G+ tP+k++i++i++eL+++G Gh_A11G2876 84 ARQRWTPTPLQLQILENIYEQGTGTPSKQKIKEIASELAQHG 125 789**************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-6	80	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-7	84	122	IPR009057	Homeodomain-like
Pfam	PF00046	3.0E-8	85	121	IPR001356	Homeobox domain
CDD	cd00086	8.83E-5	85	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MEWENQHGEE EYLQYQIQNG VCGKVMSDEQ VEELKKQIVA YSAISEQLAE LHKSMSAPHD 60 FTGIRLGNLY SDPISASVGQ KITARQRWTP TPLQLQILEN IYEQGTGTPS KQKIKEIASE 120 LAQHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629879.1	2e-84	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	Q5QMM3	2e-43	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2P5YHJ0	1e-85	A0A2P5YHJ0_GOSBA; Uncharacterized protein
STRING	Gorai.007G372000.1	1e-80	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17223	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-45	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]