PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G2949

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 483aa MW: 54272.8 Da PI: 6.9613

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2949	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	23.7	9.7e-08	336	361	16	41
TCR 16 kYCeCfaagkkCseeCkCedCkNkee 41 +YCeCfaag +C++ C C++C Nk + Gh_A11G2949 336 RYCECFAAGIYCKDCCACDNCLNKPD 361 8**********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54236	3.06E-12	55	125	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	1.9E-16	55	129	No hit	No description
CDD	cd00196	0.00139	66	127	No hit	No description
PROSITE profile	PS51634	9.237	326	483	IPR005172	CRC domain
Pfam	PF03638	9.0E-5	336	359	IPR005172	CRC domain
Gene3D	G3DSA:3.30.428.10	1.1E-7	409	440	IPR011146	HIT-like domain
Pfam	PF01230	1.0E-4	412	434	IPR001310	Histidine triad (HIT) protein
SuperFamily	SSF54197	2.98E-5	412	451	IPR011146	HIT-like domain
SuperFamily	SSF48452	8.72E-8	440	481	IPR011990	Tetratricopeptide-like helical domain
Gene3D	G3DSA:1.25.40.10	8.9E-6	441	482	IPR011990	Tetratricopeptide-like helical domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003824	Molecular Function	catalytic activity
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MESGAKEEEK VLGYNCKNVK KVALLSTLAA LLDDPILADV PKKPSLSDVD TLINLELGSA 60 MCISSFKLDG TFFDVAVMNS ATVKDLKLAI KKRHVWANFC LAYHNEKLLD DGAALQDFGV 120 RNNSQFIKEG SKKRFWDQLT SILTRRMWSY LEFKSRILSG AKLVRISQSM DQCTFGFVFI 180 LLGACTHHDE IGGSSSNGRN QDDSLIKHGE YWAQHDELHG ACFNASQVTT GKTNDNTNDG 240 MVEISDDERL DTMLEFSSKN IWEHVESDEF MEHVRQGLTN YPNPKIAQKG RGKFHIAFLA 300 VGFIEFRNKH SQMRLKPGNT ATVEDPDVGN SYTRDRYCEC FAAGIYCKDC CACDNCLNKP 360 DYEDIVLDIR HQIELRNPLA FAPPLVNPPN DSPNFTVKDA TMRIVTIRLA RSQVLAFRDI 420 APQAPTHVLI IPKSKDGLSA LDLKPNYVRA WANMGISYAY QALDLKPNYV RAWANMGISY 480 TKQ

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MESGAKEEEK VLGYNCKNVK KVALLSTLAA LLDDPILADV PKKPSLSDVD TLINLELGSA  60
MCISSFKLDG TFFDVAVMNS ATVKDLKLAI KKRHVWANFC LAYHNEKLLD DGAALQDFGV  120
RNNSQFIKEG SKKRFWDQLT SILTRRMWSY LEFKSRILSG AKLVRISQSM DQCTFGFVFI  180
LLGACTHHDE IGGSSSNGRN QDDSLIKHGE YWAQHDELHG ACFNASQVTT GKTNDNTNDG  240
MVEISDDERL DTMLEFSSKN IWEHVESDEF MEHVRQGLTN YPNPKIAQKG RGKFHIAFLA  300
VGFIEFRNKH SQMRLKPGNT ATVEDPDVGN SYTRDRYCEC FAAGIYCKDC CACDNCLNKP  360
DYEDIVLDIR HQIELRNPLA FAPPLVNPPN DSPNFTVKDA TMRIVTIRLA RSQVLAFRDI  420
APQAPTHVLI IPKSKDGLSA LDLKPNYVRA WANMGISYAY QALDLKPNYV RAWANMGISY  480
TKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.4651	1e-115	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243074	1e-31	AC243074.1 Gossypium arboreum clone GAH006G07-jlu, complete sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	4e-17	TESMIN/TSO1-like CXC 2