PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G2973

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 201aa MW: 22685.1 Da PI: 4.9764

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2973	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.1	2.1e-18	34	83	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a++ ++ge Gh_A11G2973 34 YRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFETAEMAARAHDVAALTIKGE 83 9**998.******854...6*********************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.314	33	90	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-37	33	96	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.4E-33	33	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.16E-22	33	92	IPR016177	DNA-binding domain
PRINTS	PR00367	3.5E-11	34	45	IPR001471	AP2/ERF domain
CDD	cd00018	2.81E-34	34	92	No hit	No description
Pfam	PF00847	5.4E-12	34	83	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	56	72	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MSTTEVPLIA TSETQSSSSP PENDEIFEGK HQTYRGVRMR QWGKWVSEIR EPKKKSRIWL 60 GTFETAEMAA RAHDVAALTI KGESAYLNFP DSAHELPRPR SSSPKDIQAA AAKAAAMSFT 120 KSSHKHDEDD ADQLIPHRDS SSSSSPLIND DAFIDLPDLL MHMNHRIDEF WVSFPWPVTA 180 TDDDIVENGF GYSESRLREY F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-18	31	90	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016709342.1	1e-148	PREDICTED: ethylene-responsive transcription factor ERF038-like isoform X2
Swissprot	Q9ZQP3	1e-52	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	A0A1U8L3X5	1e-146	A0A1U8L3X5_GOSHI; ethylene-responsive transcription factor ERF038-like isoform X2
STRING	Gorai.007G028800.1	1e-124	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	1e-52	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]