PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G3020
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 378aa    MW: 41741.4 Da    PI: 6.6081
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G3020genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.6e-19294328135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l
  Gh_A11G3020 294 CSHCGVTKTPQWRAGPMGVKTLCNACGVRFKSGRL 328
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-17288342IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.229288324IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-13290351No hitNo description
Gene3DG3DSA:3.30.50.104.9E-15292326IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.50E-14293341No hitNo description
PfamPF003201.4E-16294328IPR000679Zinc finger, GATA-type
PROSITE patternPS003440294319IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDAFYHHSML YQTHHHPFFF KFPPLASTTP LLLSSSLQEM ECVEAALKTS FRKEMALKSS  60
PQAFLEDIWV VNNGQNGVSC DDFSVDDLFD FTHEEGFLEQ QNEDEEEEEQ VPVSSSHKRQ  120
KLSQEHHFSN DTINFDYSSL STDELAVPAE DVANLEWLSH FVEDSFSEHS AAAYPAGTLT  180
EKPKLPDNKL PKPEKPVATC FKTRVPGKAR SKRSRTGGRV WCLGASPPFT ESSSSSSSSS  240
SSSPSASSPW FLCSNSGSGS TLEPSESLSM EKKHKKRPAT ESTIGNGTQP TRRCSHCGVT  300
KTPQWRAGPM GVKTLCNACG VRFKSGRLLP EYRPACSPTF SSELHSNHHR KVLEMRRQKE  360
ASGEAEPGSV PTSVPSFG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.103410.0boll| ovule| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635293.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH574e-89GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2P5WIA80.0A0A2P5WIA8_GOSBA; GATA transcription factor
STRINGGorai.007G049700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-84GATA transcription factor 5