PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G3022
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 346aa    MW: 38946 Da    PI: 6.3814
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G3022genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.62.1e-31218273156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+peLH+ Fv+a++qLGGs++AtPk+i+e+m+v++Lt+++vkSHLQkYRl+
  Gh_A11G3022 218 KQRRCWSPELHRLFVDALQQLGGSQVATPKQIKEVMQVDDLTNDEVKSHLQKYRLH 273
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.548215275IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-28215276IPR009057Homeodomain-like
SuperFamilySSF466896.27E-18216276IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-26218273IPR006447Myb domain, plants
PfamPF002492.8E-7220271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MELSLDLSSV FVPKTITEFL KEASKIKDGF QRSSKISDYV KRLEDEMKKI DGFKRELPLC  60
MLLLKDGIER LKVEEMQCKE TDDGLPLKEN DDGDKTNWLS SVQLWNSDFN IVDHNKKPNT  120
VSELKLRSGR EEEEEDMSEN PIKVCNNKSR GGAFVPFKDI SGIRLMNPSF ELVSCNGILR  180
NNGGCTIGSG SSLTAEKTQI KFQTESQDQQ KLQQNSRKQR RCWSPELHRL FVDALQQLGG  240
SQVATPKQIK EVMQVDDLTN DEVKSHLQKY RLHIRKLPPS STRNQCSENM KSQSGSPQCP  300
LTVSALAKGM SSTGGDSMDG EEDEKSDGLS WRSGVHKPGE IECIVR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.196600.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271012e-53HQ527101.1 Gossypium herbaceum clone NBRI_D_EYT27PB02DTG6D simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636340.10.0PREDICTED: myb family transcription factor EFM-like
TrEMBLA0A2P5RPV80.0A0A2P5RPV8_GOSBA; Uncharacterized protein
STRINGGorai.007G053100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.13e-61G2-like family protein