PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G3214
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 940aa    MW: 104802 Da    PI: 7.8272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G3214genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-09177198325
                  S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                  t lC++f++ G C++G++C+F H
  Gh_A11G3214 177 TQLCKDFMA-GRCRRGSQCHFLH 198
                  78*******.************* PP
2zf-CCCH21.34.8e-07240259626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C +f++ G C++G++C+FaH+
  Gh_A11G3214 240 CTDFLK-GNCRRGASCRFAHD 259
                  9*****.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.009174201IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5174200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5176199IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6177198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-8177199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315234261IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4234260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5237259IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-5240259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981298325IPR000571Zinc finger, CCCH-type
SMARTSM003560.28298324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5301323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MSGSRKRGSK WNSKEEQQYS LENVRDKGWS AKGSAPFHDR ESEHGYFSAE VGRKDKWSVV  60
GVGDMMKSKH GMPSRESFHG SRGGEKDDNN DFVKNWKTTT PWDGDETYSM KMSPGLDDWR  120
LKKRHSSPKG DWNGSHRSRS RSWSRSRSRS RSRSPVRSVR WQSGLHERTR NRSGVSTQLC  180
KDFMAGRCRR GSQCHFLHQD IQSREDGWDN RQKRAGVSKY ITHDDCKDYL VKSGRSTDCC  240
TDFLKGNCRR GASCRFAHDG ATDGFGRRTT NEISSERENT KRNRIRTPDR DGEREARRSS  300
DIPCKFFASG NCHNGKYCRF SHHGQARASP DRRSRGDRGV WCPSSINVDR LQDGPTLRDT  360
DASFNVNKSW NAPERSDANV INEAEIPWNG PKWSDLDASN DANNSWTGSK WSDAEASNDA  420
NNLWTGSKWS DTGAYLGATK FSKETIAKNG ASEPRFSNWS MDERWRHNYD VSGKNIEADV  480
QYKTVDIDKD EQTPTKIENS GVNIGVSEPK GAEESLGDME MSPEWNYKIK SSVKKELTHG  540
SKPSLVETLL HSQERNITEE ASGQVHDGLA ALQPMLTEKS NVHQDHLMRC SSGVALPCVS  600
NALNTTSNSH IVLNFCINNT PLPSFDQPGP SPSTLPCSNL DAVGQSQVTI PSNEVTKEDA  660
QNGLLFHEEK RSNELNIGDA NVLHGNSGSK STQTMVSNEQ LTQLTNLSAS LAQLFGKGQQ  720
LPLLHAALNA HNGMQVTSIA NSGSHIEPDS MPNLQPDQDI TFPKIYDPIS DSIEPAKKQG  780
TDTKPLGFSI QPVAEKNTDG QPELSANKLL PSSLLCSNND DDYHNDLSSR REPDFDSHKP  840
NQLEPVASSE AKKKNEGVEE TKKAEGENGP SESGDADDKT DEAKKNKDSK GIRAFKFALV  900
EFVKDLLKPT WKEGQIGKEA YKNIVKKVVD KAYVEKFQKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RSRSRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.187870.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3134961e-152KF313496.1 Firmiana danxiaensis microsatellite a44026_SSR39 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641612.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_017641613.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_017641614.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_017641615.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_017641616.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
RefseqXP_017641617.10.0PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLA0A0D2QP800.0A0A0D2QP80_GOSRA; Uncharacterized protein
STRINGGorai.003G068000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15764912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-07C3H family protein