PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0018
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 210aa    MW: 24524.7 Da    PI: 9.3927
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0018genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.54.2e-33381302103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++++++d++++ ++sws+ g+sfvv+d++++++++Lp++Fkh+nf+SFvRQLn+YgF+k+++e+         we +++ F kg+k+ll++ik
   Gh_A12G0018  38 FLYKTFNMVDDPSTNCVVSWSRGGSSFVVWDTHSLSSNLLPRFFKHNNFSSFVRQLNTYGFRKIDSEK---------WESENEGFIKGQKHLLNSIK 125
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Gh_A12G0018 126 RRKNT 130
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3033127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3434127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5334127IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.7E-2938127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNPYFPLKEE FHCSNYSQYE DETPQPMEGL NDSGPPPFLY KTFNMVDDPS TNCVVSWSRG  60
GSSFVVWDTH SLSSNLLPRF FKHNNFSSFV RQLNTYGFRK IDSEKWESEN EGFIKGQKHL  120
LNSIKRRKNT SQTPVVIQQS LGSCVEDGEV DRLRRDRRVL LMELVKLRQQ QHNTRAYIKA  180
MERRLQGTEK KQQQMMSFLA SAMQNPAFLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-222912717129Heat shock factor protein 1
5d5v_B1e-222912717129Heat shock factor protein 1
5d5v_D1e-222912717129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674043e-33KR067404.1 Gossypium hirsutum HSF23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612171.11e-142PREDICTED: heat stress transcription factor A-7a
SwissprotQ6VBB21e-84HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A1R3I4V31e-113A0A1R3I4V3_COCAP; Heat shock factor (HSF)-type, DNA-binding protein
STRINGEOX946441e-108(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-72heat shock transcription factor A2
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]