PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0240
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 135aa    MW: 15757.1 Da    PI: 9.9416
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0240genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.7e-11492187
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                 f kvltp  v ++  l+lp++ + +    +g++e +++l+++d   +  +++++ r ++g   v+++ W +Fv++++L+ gD+v  + d++
  Gh_A12G0240  4 FMKVLTPIEVERR--LILPRESLPALprfEGSHEHGIMLQVKDDADNLRKFRCKKRYGGGDkLVIETDWIQFVNSKKLRPGDVVAVYKDDD 92
                 8899999999875..9******998899989999*******************663333336**********************9885544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-13393IPR015300DNA-binding pseudobarrel domain
CDDcd100176.91E-11392No hitNo description
SuperFamilySSF1019361.31E-9392IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-8495IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MQLFMKVLTP IEVERRLILP RESLPALPRF EGSHEHGIML QVKDDADNLR KFRCKKRYGG  60
GDKLVIETDW IQFVNSKKLR PGDVVAVYKD DDRVSGTLYR IEVKXDVVAV YKDDDRVSGT  120
LYRIEVKRRN YKLGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435300.13e-61PREDICTED: B3 domain-containing protein Os04g0581400-like
TrEMBLA0A2P5YRI81e-70A0A2P5YRI8_GOSBA; Uncharacterized protein
STRINGGorai.008G027000.11e-52(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2216735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.14e-07B3 family protein